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[182072_at]

Description C41H7.4 /REP_DB=WormBase Gene ID /WP=CE08675 /TR=O17151 /GB=AAB70932.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 23      6grp_total > 24      4grp_total > 17      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 65.2
(-0.6)
P 		67.2
(-0.4)
P 		46.4
(-3)
A 		94.1
(3)
P 		48
B 59.9
(-1.1)
P 		71.4
(1.9)
A 		75.8
(3)
P 		52.4
(-3)
P 		23
C 46.8
(-3)
P 		63.9
(-1.1)
P 		70.4
(-0.4)
P 		101.7
(3)
P 		55
avr 57.3
(-3) 		67.5
(-0.6) 		64.2
(-1.4) 		82.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 121.2
(3)
P 		63.8
(-0.8)
P 		68.9
(-0.5)
P 		30.5
(-3)
A 		71.6
(-0.3)
P 		35.9
(-2.6)
A 		91
B 93.8
(1.9)
P 		104.5
(3)
P 		89.9
(1.5)
P 		58.8
(-1.7)
P 		46.5
(-3)
P 		56.2
(-2)
P 		58
C 96.7
(3)
P 		75.7
(1.2)
P 		69.2
(0.7)
A 		85.2
(2)
A 		25.5
(-3)
A 		53.7
(-0.6)
P 		71
avr 103.9
(3) 		81.3
(0.6) 		76
(0) 		58.2
(-1.9) 		47.9
(-3) 		48.6
(-2.9) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 23.7
(3)
P 		14.6
(-1.7)
P 		12.1
(-3)
A 		13.8
(-2.1)
P 		12
B 19.1
(3)
P 		17.6
(1.9)
A 		17.6
(1.9)
P 		11.2
(-3)
P 		8
C 15.5
(-3)
P 		18.4
(-1.1)
P 		24.5
(3)
P 		17.1
(-1.9)
P 		9
avr 19.4
(3) 		16.9
(0.2) 		18.1
(1.6) 		14
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 22.4
(2.9)
P 		22.7
(3)
P 		15
(-0.1)
P 		7.7
(-3)
A 		21.6
(2.6)
P 		8.7
(-2.6)
A 		15
B 32.6
(2.3)
P 		34.8
(3)
P 		21.8
(-1.1)
P 		15.6
(-3)
P 		18.9
(-2)
P 		21
(-1.3)
P 		19
C 35.8
(3)
P 		23.1
(0.2)
P 		17.6
(-1)
A 		17.1
(-1.1)
A 		8.2
(-3)
A 		18
(-0.9)
P 		28
avr 30.3
(3) 		26.9
(1.8) 		18.1
(-1.4) 		13.5
(-3) 		16.2
(-2) 		15.9
(-2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5526
Sequence Type Exemplar sequence
Representative Public ID C41H7.4 NCBI
Target Description C41H7.4 /REP_DB=WormBase Gene ID /WP=CE08675 /TR=O17151 /GB=AAB70932.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062021 NCBI Caenorhabditis elegans C41H7.4 (C41H7.4) mRNA, complete cds. 11/11 None
SNAP00000027508 ENSEMBL cdna:SNAP chromosome:CEL140:II:3004567:3005505:1 11/11 None
GENEFINDER00000027516 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3002990:3005505:1 11/11 None
C41H7.4 ENSEMBL cdna:known chromosome:CEL140:II:3003977:3005519:1 gene:C41H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3003975-3005504(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.4
Entrez Gene 173648 Entrez gene
SwissProt O17151 EMBL-EBI
WormBase CE08675 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-145
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-106
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 1.0E-102
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 9.0E-81
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 6.0E-56
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.8E-108
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182072_AT
gagacgctcggtcagtttgaggcgaaccttcgcggcgaagaatggaccggagaagatcag
attcaggatgaagatgatattatctacgacgggatgttggacggtgatctgagtaatagc
tctcacaatttcgctggacatggtgcggacgacgattatcaagtggaggaggtgcagtat
tctgaggcaggatttcgtagacctgagagtgtccgaggaggggatagttatttcgggcac
gggccaccgccgcagatggttatgggatcctcggcgagcaacttctcgagtgctacgcaa
tcgcactcgcgaaaccgcaagagcagctccatcgatcacactgaagtcgaccgcagcgcc
cagcacattgccgagcaagcgaaacggctcttcctacagtaccctgagaagtccaatctg
attagagagacgatgttcaagacgatcctggcgtttgacgatccgtctgccgattatcag
aatgtcggggagatattcgacgacttggcggcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACGCTCGGTCAGTTTGAGGCGA 436 393 436 Antisense
GCTCTCACAATTTCGCTGGACATGG 219 301 554 Antisense
GGACATGGTGCGGACGACGATTATC 529 523 571 Antisense
GCAGATGGTTATGGGATCCTCGGCG 657 309 687 Antisense
ATCCTCGGCGAGCAACTTCTCGAGT 167 39 702 Antisense
AACTTCTCGAGTGCTACGCAATCGC 297 137 715 Antisense
TCGCGAAACCGCAAGAGCAGCTCCA 80 601 742 Antisense
GCAGCTCCATCGATCACACTGAAGT 448 313 758 Antisense
AGACGATCCTGGCGTTTGACGATCC 124 69 875 Antisense
ACGATCCGTCTGCCGATTATCAGAA 710 91 893 Antisense
AGATATTCGACGACTTGGCGGCACA 522 65 926 Antisense
Sequence Source Affymetrix Proprietary Database