[Home] | [Total List]

[182070_at] 7TM chemoreceptor, srt family

Description B0238.3 /REP_DB=WormBase Gene ID /WP=CE07693 /TR=O16494 /GB=AAB65984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 43      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 22.8
(-1.6)
A 		66
(3)
A 		37.4
(-0)
A 		9.5
(-3)
A 		57
B 21.7
(1.1)
A 		29.2
(3)
A 		12.2
(-1.3)
A 		5.4
(-3)
A 		24
C 16.3
(-3)
A 		26.6
(-1.6)
A 		16.7
(-2.9)
A 		60.6
(3)
A 		44
avr 20.3
(-3) 		40.6
(3) 		22.1
(-2.5) 		25.2
(-1.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 9.8
(-2.7)
A 		23.6
(0.1)
A 		37.6
(3)
A 		10.6
(-2.6)
A 		8.6
(-3)
A 		8.5
(-3)
A 		29
B 8.5
(-1.8)
A 		3.8
(-3)
A 		28.3
(3)
A 		7
(-2.2)
A 		3.9
(-3)
A 		11.4
(-1.1)
A 		25
C 3.4
(-3)
A 		52.8
(3)
A 		38.2
(1.2)
A 		7.1
(-2.6)
A 		38.4
(1.3)
A 		13.3
(-1.8)
A 		49
avr 7.2
(-3) 		26.7
(1.3) 		34.7
(3) 		8.2
(-2.8) 		17
(-0.9) 		11.1
(-2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.3
(0.2)
A 		14.3
(3)
A 		9.8
(0.9)
A 		1.4
(-3)
A 		13
B 6.9
(2.7)
A 		7.2
(3)
A 		2.8
(-1.4)
A 		1.2
(-3)
A 		6
C 5.4
(-3)
A 		7.7
(-0.1)
A 		5.8
(-2.5)
A 		10.2
(3)
A 		5
avr 6.9
(-0.1) 		9.7
(3) 		6.1
(-1) 		4.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-3)
A 		8.4
(3)
A 		8.2
(2.8)
A 		2.7
(-2.2)
A 		2.6
(-2.3)
A 		2.1
(-2.7)
A 		7
B 3
(-1.2)
A 		1.3
(-3)
A 		6.9
(3)
A 		1.8
(-2.5)
A 		1.6
(-2.7)
A 		4.2
(0.1)
A 		6
C 1.3
(-3)
A 		16.1
(3)
A 		9.7
(0.4)
A 		1.4
(-3)
A 		12.4
(1.5)
A 		4.5
(-1.7)
A 		15
avr 2
(-3) 		8.6
(3) 		8.3
(2.7) 		2
(-3) 		5.5
(0.2) 		3.6
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11647
Sequence Type Exemplar sequence
Representative Public ID B0238.3 NCBI
Target Description B0238.3 /REP_DB=WormBase Gene ID /WP=CE07693 /TR=O16494 /GB=AAB65984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072002 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-68) (srt-68) mRNA, complete cds. 11/11 None
GENEFINDER00000038881 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5250056:5255010:-1 11/11 None
B0238.3 ENSEMBL cdna:known chromosome:CEL140:V:5250416:5251928:-1 gene:B0238.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038869 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5250415-5251928(-) 96.57 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-68
Ensembl B0238.3
Entrez Gene 181867 Entrez gene
SwissProt O16494 EMBL-EBI
WormBase CE35208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65984 Serpentine receptor, class t protein 68 [Caenorhabditis elegans] ref|NP_504403.2| Serpentine Receptor, class T family member (srt-68) [Caenorhabditis elegans] 1.0E-147
blast AAB65984 Serpentine receptor, class t protein 68 [Caenorhabditis elegans] ref|NP_504403.2| Serpentine Receptor, class T family member (srt-68) [Caenorhabditis elegans] 1.0E-145
blast E89045 protein B0238.4 [imported] - Caenorhabditis elegans 1.0E-132
blast E89045 protein B0238.4 [imported] - Caenorhabditis elegans 1.0E-109
blast AAB65982 Serpentine receptor, class t protein 67 [Caenorhabditis elegans] ref|NP_504405.1| Serpentine Receptor, class T family member (srt-67) [Caenorhabditis elegans] 4.0E-84
blast AAB65982 Serpentine receptor, class t protein 67 [Caenorhabditis elegans] ref|NP_504405.1| Serpentine Receptor, class T family member (srt-67) [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.3E-27
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.2E-34
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.0E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504403.2 7 18-40,53-75,90-112,133-155,175-197,221-243,258-278
B0238.3 7 18-40,53-75,90-112,133-155,175-197,221-243,258-278
GENEFINDER00000038881 13 18-40,53-75,90-112,132-154,183-205,222-244,307-329,342-364,379-401,422-444,464-486,511-533,548-570
Sequence
Target Sequence 
>C. ELEGANS:182070_AT
ttatcacttccccagttttggtgtttccaaagattttaaagggatatgaagtgattgtca
gggtaattgggtgcatgattaattcaagctggattggagacttaccaatgatgagtctac
tatcagtaagccgtgtcttaatatttaccaacacaattaaaacttcgaaattcccaatct
ttgtcaaactttccgtagtttgcatattatcatgggttgtctatgtgttcttatacggat
gtataactcaaaacttcatgtttgttcctcccggttgggcttacgacttggatgcccctc
atgctgctatattcgctcacctggaaatcggattgtcttttctgagtttgacaatatcgt
atttgtcatatcttgccatcgactatattatacgtgtaaagaaaaccggaactagtaatt
cccagtttcgaaaaaatgaaatccggattctagctcaatcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCACTTCCCCAGTTTTGGTGTT 626 671 230 Antisense
GAGTCTACTATCAGTAAGCCGTGTC 104 397 342 Antisense
AGCCGTGTCTTAATATTTACCAACA 561 83 358 Antisense
CCAATCTTTGTCAAACTTTCCGTAG 611 275 403 Antisense
GGGTTGTCTATGTGTTCTTATACGG 160 495 443 Antisense
CAAAACTTCATGTTTGTTCCTCCCG 375 189 478 Antisense
TGGGCTTACGACTTGGATGCCCCTC 178 555 505 Antisense
GCTATATTCGCTCACCTGGAAATCG 87 303 535 Antisense
AATCGGATTGTCTTTTCTGAGTTTG 407 169 555 Antisense
TTGTCATATCTTGCCATCGACTATA 413 707 592 Antisense
AAATCCGGATTCTAGCTCAATCAAC 149 119 668 Antisense
Sequence Source Affymetrix Proprietary Database