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[182069_at]

Description ZK1053.5 /REP_DB=WormBase Gene ID /WP=CE15523 /TR=O18289 /GB=CAB04981.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      4grp_high_8_8 > 16      6grp_total > 73      4grp_total > 47      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 110.2
(3)
P 		101.6
(1.7)
P 		79.1
(-1.7)
P 		70.4
(-3)
A 		40
B 117.5
(3)
P 		97.3
(-1)
M 		87.4
(-3)
P 		101
(-0.3)
P 		30
C 161.4
(3)
P 		62.4
(-3)
P 		75.9
(-2.2)
P 		94.3
(-1.1)
P 		99
avr 129.7
(3) 		87.1
(-2.2) 		80.8
(-3) 		88.6
(-2) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 74.5
(-3)
A 		97.7
(-1.6)
P 		156.1
(1.9)
P 		174.1
(3)
P 		121.8
(-0.2)
P 		107.7
(-1)
P 		100
B 73
(-3)
P 		88.7
(-2.2)
P 		108
(-1.2)
P 		191.4
(3)
P 		162.9
(1.6)
P 		103.3
(-1.5)
P 		118
C 70.7
(-3)
P 		97.2
(-0.4)
P 		123.2
(2.3)
P 		130.7
(3)
P 		101.1
(0)
P 		124.6
(2.4)
P 		60
avr 72.7
(-3) 		94.5
(-1.6) 		129.1
(0.7) 		165.4
(3) 		128.6
(0.6) 		111.9
(-0.5) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 40.1
(3)
P 		22.1
(-0.6)
P 		20.7
(-0.9)
P 		10.3
(-3)
A 		30
B 37.5
(3)
P 		24
(-1.7)
M 		20.3
(-3)
P 		21.5
(-2.6)
P 		17
C 53.4
(3)
P 		17.9
(-2.7)
P 		26.5
(-1.3)
P 		15.9
(-3)
P 		38
avr 43.7
(3) 		21.3
(-1.8) 		22.5
(-1.6) 		15.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 13.7
(-3)
A 		34.7
(1.1)
P 		34
(1)
P 		44.2
(3)
P 		36.8
(1.5)
P 		26.2
(-0.5)
P 		31
B 25.4
(-3)
P 		29.5
(-2.4)
P 		26.2
(-2.9)
P 		50.7
(0.7)
P 		66.2
(3)
P 		38.5
(-1.1)
P 		41
C 26.2
(-3)
P 		29.7
(-1.6)
P 		31.4
(-1)
P 		26.3
(-3)
P 		32.7
(-0.5)
P 		41.7
(3)
P 		16
avr 21.8
(-3) 		31.3
(-0.6) 		30.5
(-0.8) 		40.4
(1.8) 		45.2
(3) 		35.5
(0.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1379
Sequence Type Exemplar sequence
Representative Public ID ZK1053.5 NCBI
Target Description ZK1053.5 /REP_DB=WormBase Gene ID /WP=CE15523 /TR=O18289 /GB=CAB04981.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060920 NCBI Caenorhabditis elegans ZK1053.5 (ZK1053.5) mRNA, complete cds. 11/11 None
SNAP00000040799 ENSEMBL cdna:SNAP chromosome:CEL140:I:13243486:13244589:1 11/11 None
GENEFINDER00000040807 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13243486:13244589:1 11/11 None
ZK1053.5 ENSEMBL cdna:known chromosome:CEL140:I:13243486:13244589:1 gene:ZK1053.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13243416-13244520(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.5
Entrez Gene 191509 Entrez gene
SwissProt O18289 EMBL-EBI
WormBase CE15523 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOUSE430A_2:1453181_X_AT phospholipid scramblase 1 mm
MOE430A:1453181_X_AT phospholipid scramblase 1 mm
MOUSE430_2:1453181_X_AT phospholipid scramblase 1 mm
MU11KSUBA:D78354_AT phospholipid scramblase 1 mm
MG-U74AV2:102839_AT phospholipid scramblase 1 mm
MOE430A:1429527_A_AT phospholipid scramblase 1 mm
MOUSE430A_2:1429527_A_AT phospholipid scramblase 1 mm
MOUSE430_2:1429527_A_AT phospholipid scramblase 1 mm
MG-U74CV2:134245_AT Phospholipid scramblase 1, mRNA (cDNA clone MGC:5827 IMAGE:3491904) mm
MOE430B:1457824_AT Phospholipid scramblase 1, mRNA (cDNA clone MGC:5827 IMAGE:3491904) mm
MOUSE430_2:1457824_AT Phospholipid scramblase 1, mRNA (cDNA clone MGC:5827 IMAGE:3491904) mm
Protein Similarities
Method ID Description E-Value
blast CAB04981 Hypothetical protein ZK1053.5 [Caenorhabditis elegans] ref|NP_493321.1| ZK1053.5 [Caenorhabditis elegans] 1.0E-156
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 5.0E-92
blast CAB04755 Hypothetical protein T22H2.5a [Caenorhabditis elegans] ref|NP_492977.2| T22H2.5a [Caenorhabditis elegans] 5.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182069_AT
gacacggtcatggtgcatcaagtgaaggaggttcttgagattcttactggatgggagagt
aaaaataagtatgctattagaaataaaaatggacagcagtgttactatgcgttcgaagaa
tccaacgcttgggagagacagtgttgtggatcgcaacgaggttttacgatgcacattgtg
gataattttaacaagaatgtgctcatcgtcaaacgagaattaagatgctgcgcagactca
ttttgtggatgcttgctaggtcttcaaaacatatgcaccattgaatcactatcaactggc
cttctgggtactgtccttcaaggatatggttgcacgaattcattctataacattttggat
aaagatggaaatctgattttcctagttgatggtcaaggatgttgcacaagttgctgctgt
gaagataaggattttacgatcaaaactcccgacagctccgtgccaattggctcaataacc
aagaagtggggtggactattgcgtgaagcgtttaccgatgccgacacttttgcagtcacc
tttcccatcgaccttgatgtcaagctcaaagcgatactgctgggagccacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGGTCATGGTGCATCAAGTGA 681 365 181 Antisense
TGCTGCGCAGACTCATTTTGTGGAT 608 581 406 Antisense
TTGTGGATGCTTGCTAGGTCTTCAA 548 705 423 Antisense
TGAATCACTATCAACTGGCCTTCTG 531 575 462 Antisense
CTTCTGGGTACTGTCCTTCAAGGAT 416 219 481 Antisense
AGGATGTTGCACAAGTTGCTGCTGT 404 57 576 Antisense
GTGGGGTGGACTATTGCGTGAAGCG 357 485 666 Antisense
TGCGTGAAGCGTTTACCGATGCCGA 432 583 680 Antisense
TACCGATGCCGACACTTTTGCAGTC 351 647 693 Antisense
CTTTCCCATCGACCTTGATGTCAAG 29 223 720 Antisense
GCGATACTGCTGGGAGCCACATTTT 220 287 751 Antisense
Sequence Source Affymetrix Proprietary Database