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[182068_at]

Description T05F1.11 /REP_DB=WormBase Gene ID /WP=CE13257 /TR=Q9XUQ9 /GB=CAB04699.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 54      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 823.6
(3)
P 		364.8
(-0.8)
P 		238.5
(-1.8)
P 		97.7
(-3)
A 		726
B 722.5
(3)
P 		396.2
(-0.3)
P 		274.2
(-1.6)
P 		134.6
(-3)
A 		588
C 837.5
(3)
P 		443.2
(-0.4)
P 		379.8
(-0.9)
P 		136.3
(-3)
A 		701
avr 794.5
(3) 		401.4
(-0.5) 		297.5
(-1.4) 		122.9
(-3) 		672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 394.4
(-0.7)
P 		587.5
(0.9)
P 		838.6
(3)
P 		392.2
(-0.8)
P 		322.4
(-1.3)
P 		126.1
(-3)
P 		713
B 555.2
(1.4)
P 		685.5
(3)
P 		686.2
(3)
P 		440.8
(0)
P 		285.7
(-1.8)
P 		190.6
(-3)
P 		496
C 479.1
(0.4)
P 		711
(3)
P 		505.5
(0.7)
P 		555.9
(1.2)
P 		248.4
(-2.3)
P 		183.1
(-3)
P 		528
avr 476.2
(0.6) 		661.3
(2.8) 		676.8
(3) 		463
(0.5) 		285.5
(-1.6) 		166.6
(-3) 		510
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 299.9
(3)
P 		79.2
(-1.6)
P 		62.3
(-2)
P 		14.3
(-3)
A 		286
B 230.4
(3)
P 		97.9
(-0.9)
P 		63.5
(-2)
P 		28.7
(-3)
A 		202
C 277.2
(3)
P 		127.4
(-0.5)
P 		132.4
(-0.4)
P 		23
(-3)
A 		254
avr 269.2
(3) 		101.5
(-1.1) 		86.1
(-1.4) 		22
(-3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 72.7
(-1.6)
P 		208.9
(3)
P 		182.6
(2.1)
P 		99.5
(-0.7)
P 		97.3
(-0.8)
P 		30.7
(-3)
P 		178
B 193.2
(1.7)
P 		228.2
(3)
P 		166.6
(0.6)
P 		116.8
(-1.3)
P 		116.1
(-1.3)
P 		71.1
(-3)
P 		157
C 177.6
(1.5)
P 		216.9
(3)
P 		128.7
(-0.4)
P 		111.8
(-1.1)
P 		80.4
(-2.3)
P 		61.3
(-3)
P 		156
avr 147.8
(0.4) 		218
(3) 		159.3
(0.8) 		109.4
(-1) 		97.9
(-1.4) 		54.4
(-3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.437
Sequence Type Exemplar sequence
Representative Public ID T05F1.11 NCBI
Target Description T05F1.11 /REP_DB=WormBase Gene ID /WP=CE13257 /TR=Q9XUQ9 /GB=CAB04699.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060163 NCBI Caenorhabditis elegans T05F1.11 (T05F1.11) mRNA, complete cds. 11/11 None
GENEFINDER00000020953 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9657922:9664145:1 11/11 None
SNAP00000020950 ENSEMBL cdna:SNAP chromosome:CEL140:I:9661260:9664155:1 11/11 None
T05F1.11 ENSEMBL cdna:known chromosome:CEL140:I:9661222:9665161:1 gene:T05F1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9658655-9664086(+) 96.55 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.11
Entrez Gene 172811 Entrez gene
SwissProt Q9XUQ9 EMBL-EBI
WormBase CE32486 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04699 Hypothetical protein T05F1.11 [Caenorhabditis elegans] ref|NP_492564.2| T05F1.11 [Caenorhabditis elegans] 0.0
blast CAD56598 Hypothetical protein T05F1.13 [Caenorhabditis elegans] ref|NP_871891.1| T05F1.13 [Caenorhabditis elegans] 0.0
blast CAB04699 Hypothetical protein T05F1.11 [Caenorhabditis elegans] ref|NP_492564.2| T05F1.11 [Caenorhabditis elegans] 1.0E-138
blast CAB02969 Hypothetical protein F17B5.1 [Caenorhabditis elegans] ref|NP_493308.1| F17B5.1 [Caenorhabditis elegans] 1.0E-66
blast CAB02969 Hypothetical protein F17B5.1 [Caenorhabditis elegans] ref|NP_493308.1| F17B5.1 [Caenorhabditis elegans] 2.0E-61
blast CAB02969 Hypothetical protein F17B5.1 [Caenorhabditis elegans] ref|NP_493308.1| F17B5.1 [Caenorhabditis elegans] 3.0E-59
blast CAE59297 Hypothetical protein CBG02632 [Caenorhabditis briggsae] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.4E-8
Sequence
Target Sequence 
>C. ELEGANS:182068_AT
gatgaacaattgtacatttctccaaaatgttcctctcttcagacatctacatccatcagg
atcatattctgaacgaatgctcgatggaaaggttattggattgtattattccggttattg
gtgtcaaccatctcgtgactttacaccaattctcgcacaattctatagtcaagtagataa
gaatttcgagatattatttatttcaagcgacaggagtgaacaggagatgaattattattt
gcaaagttctcatggcgattggttccatttgccattcgactcaccaataagcaagcattt
acagcagttcaacactaaaaatgcgattccaacattgataataataaagccaaacggaac
agttattactgttgatggacgagatcaagtgtctagttttctcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAACAATTGTACATTTCTCCAA 35 413 2580 Antisense
TCTCCAAAATGTTCCTCTCTTCAGA 92 611 2598 Antisense
TCTCTTCAGACATCTACATCCATCA 225 613 2613 Antisense
GTATTATTCCGGTTATTGGTGTCAA 614 451 2682 Antisense
GGTGTCAACCATCTCGTGACTTTAC 65 501 2699 Antisense
GTGACTTTACACCAATTCTCGCACA 271 483 2714 Antisense
ACACCAATTCTCGCACAATTCTATA 457 109 2722 Antisense
GCAAAGTTCTCATGGCGATTGGTTC 111 317 2820 Antisense
TTGCCATTCGACTCACCAATAAGCA 214 701 2848 Antisense
GCAAGCATTTACAGCAGTTCAACAC 590 319 2870 Antisense
GATCAAGTGTCTAGTTTTCTCAACA 124 423 2962 Antisense
Sequence Source Affymetrix Proprietary Database