[Home] | [Total List]

[182067_at]

Description T23B3.3 /REP_DB=WormBase Gene ID /WP=CE14012 /TR=P91490 /GB=AAB42330.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 33.7
(-3)
A 		61.9
(0.5)
A 		55.9
(-0.3)
A 		82.2
(3)
A 		49
B 69.9
(2.8)
A 		71.3
(3)
A 		19.8
(-3)
A 		33.9
(-1.4)
A 		52
C 60.9
(-0.5)
A 		58.7
(-0.7)
A 		27.8
(-3)
A 		108.1
(3)
P 		80
avr 54.8
(0) 		64
(1.4) 		34.5
(-3) 		74.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 52.1
(-1.1)
A 		69
(0.4)
A 		48.3
(-1.4)
A 		98.2
(3)
A 		30.3
(-3)
A 		33.6
(-2.7)
A 		68
B 50.4
(1)
A 		61.3
(2.4)
A 		46.8
(0.5)
A 		65.7
(3)
A 		48.1
(0.7)
A 		20.7
(-3)
A 		45
C 67.1
(2.2)
A 		74.7
(3)
A 		71
(2.6)
A 		62.8
(1.7)
A 		33.8
(-1.5)
A 		20.6
(-3)
A 		54
avr 56.5
(0.7) 		68.3
(2.1) 		55.4
(0.6) 		75.6
(3) 		37.4
(-1.5) 		25
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.3
(-2.3)
A 		13.4
(0.2)
A 		14.6
(3)
A 		12
(-3)
A 		3
B 22.3
(3)
A 		17.6
(1.4)
A 		4.6
(-3)
A 		7.2
(-2.1)
A 		18
C 20.2
(3)
A 		16.9
(1.1)
A 		9.7
(-3)
A 		18.2
(1.9)
P 		11
avr 18.3
(3) 		16
(1.4) 		9.6
(-3) 		12.5
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.6
(-2.5)
A 		24.6
(2.9)
A 		10.5
(-2.2)
A 		24.9
(3)
A 		9.1
(-2.7)
A 		8.2
(-3)
A 		17
B 17.5
(1.6)
A 		20.4
(3)
A 		11.4
(-1.3)
A 		17.4
(1.6)
A 		19.5
(2.6)
A 		7.7
(-3)
A 		13
C 24.9
(3)
A 		22.8
(2.3)
A 		18.1
(0.7)
A 		12.6
(-1.1)
A 		10.9
(-1.7)
A 		6.9
(-3)
A 		18
avr 17.3
(0.9) 		22.6
(3) 		13.3
(-0.7) 		18.3
(1.3) 		13.2
(-0.8) 		7.6
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.645
Sequence Type Exemplar sequence
Representative Public ID T23B3.3 NCBI
Target Description T23B3.3 /REP_DB=WormBase Gene ID /WP=CE14012 /TR=P91490 /GB=AAB42330.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059520 NCBI Caenorhabditis elegans T23B3.3 (T23B3.3) mRNA, complete cds. 11/11 None
T23B3.3 ENSEMBL cdna:known chromosome:CEL140:I:6719004:6720459:1 gene:T23B3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020983 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020989 2/11 Cross Hyb Matching Probes None
SNAP00000020984 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020988 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6718932-6720388(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B3.3
Entrez Gene 188773 Entrez gene
SwissProt P91490 EMBL-EBI
WormBase CE14012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42330 Hypothetical protein T23B3.3 [Caenorhabditis elegans] ref|NP_491921.1| T23B3.3 [Caenorhabditis elegans] 1.0E-139
blast AAK85491 Hypothetical protein R13H9.1 [Caenorhabditis elegans] ref|NP_500717.1| R13H9.1 [Caenorhabditis elegans] 2.0E-67
blast CAA90085 Hypothetical protein B0491.3 [Caenorhabditis elegans] ref|NP_496422.1| B0491.3 [Caenorhabditis elegans] 1.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182067_AT
ccagctccatggcacatactattgcactcatcattgggaaagcgatctcattttaaaagt
aaagaatatatcccacagctctttttcagagttttgatgaaattgacaagactttcggaa
ccaagaaccgcgatcaaggatatgatttgctcaaaacgcgactcgacaaaggtgatcgtt
tggtggaaatcttgtgaagacctactcaagtttgctgaagaagctgtccagaagaatcca
aaccatttcaaggcattgaagtggaatgctgtgttgactggacaagcgaccgaatatatg
gcaacgaaagaaaagttggaatgtagtaagaagttcaaggaattgctcgacaaagctctt
gctaaggagccaaaggatacggctcttctccatttgcgtggccgctacaagtactcggtg
gcatctctgacatggcttgcgaagaagcttgctgtcacgttctatcagcaaccaccatca
cattcttatgaagaggacaacgaggatttcctggctgcttttaagaacaatgcccacaag
tacctcactgaagtgtgcgacatcgaaccgtatcccgacgctgaacaggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCTCCATGGCACATACTATTGC 236 273 154 Antisense
CATACTATTGCACTCATCATTGGGA 539 211 168 Antisense
GAATATATCCCACAGCTCTTTTTCA 134 327 217 Antisense
TGATTTGCTCAAAACGCGACTCGAC 250 565 296 Antisense
GTGAAGACCTACTCAAGTTTGCTGA 471 481 347 Antisense
TGCGAAGAAGCTTGCTGTCACGTTC 287 583 591 Antisense
GACAACGAGGATTTCCTGGCTGCTT 528 365 649 Antisense
GCTGCTTTTAAGAACAATGCCCACA 408 295 667 Antisense
GCCCACAAGTACCTCACTGAAGTGT 504 287 685 Antisense
AAGTGTGCGACATCGAACCGTATCC 468 159 704 Antisense
CCGTATCCCGACGCTGAACAGGAGT 260 263 721 Antisense
Sequence Source Affymetrix Proprietary Database