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[182066_s_at]

Description F59B10.1 /REP_DB=WormBase Gene ID /WP=CE23790 /TR=Q23567 /GB=CAA88990.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      6grp_highest_nonorm > 31      6grp_total > 23      4grp_total > 50      6grp_cgc > 50      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1027
1 2 3 4 range
A 423.7
(-1)
P 		1092.4
(3)
P 		618.9
(0.1)
P 		95.8
(-3)
A 		997
B 388.1
(-0.8)
P 		938
(3)
P 		759.7
(1.8)
P 		65.3
(-3)
A 		873
C 405.6
(-0.9)
P 		939.6
(3)
P 		870.6
(2.5)
P 		121.2
(-3)
A 		818
avr 405.8
(-0.9) 		990
(3) 		749.7
(1.4) 		94.1
(-3) 		896

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1074
1 2 3 4 5 6 range
A 1304.3
(3)
P 		957.7
(0.9)
P 		692
(-0.7)
P 		910.8
(0.7)
P 		761.1
(-0.2)
P 		298.7
(-3)
P 		1006
B 1164.9
(3)
P 		681.6
(-0.1)
P 		923.6
(1.5)
P 		1072.1
(2.4)
P 		576.9
(-0.8)
P 		230.7
(-3)
P 		934
C 1175.7
(3)
P 		792.6
(0.5)
P 		1014.4
(1.9)
P 		891.6
(1.1)
P 		651.3
(-0.4)
P 		258.2
(-3)
P 		918
avr 1215
(3) 		810.6
(0.5) 		876.7
(0.9) 		958.2
(1.4) 		663.1
(-0.5) 		262.5
(-3) 		953
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 154.3
(0.8)
P 		237.1
(3)
P 		161.8
(1)
P 		14
(-3)
A 		223
B 123.8
(0)
P 		231.7
(3)
P 		176
(1.5)
P 		13.9
(-3)
A 		218
C 134.3
(-0.6)
P 		270.1
(2.3)
P 		303.4
(3)
P 		20.4
(-3)
A 		283
avr 137.5
(0.2) 		246.3
(3) 		213.7
(2.2) 		16.1
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 240.4
(0.8)
P 		340.6
(3)
P 		150.7
(-1.3)
P 		231
(0.5)
P 		229.7
(0.5)
P 		72.7
(-3)
P 		268
B 405.3
(3)
P 		226.9
(-0.4)
P 		224.3
(-0.4)
P 		284
(0.7)
P 		234.4
(-0.2)
P 		86
(-3)
P 		319
C 435.8
(3)
P 		241.9
(-0.3)
P 		258.2
(-0)
P 		179.3
(-1.4)
P 		210.8
(-0.9)
P 		86.4
(-3)
P 		349
avr 360.5
(3) 		269.8
(1) 		211.1
(-0.2) 		231.4
(0.2) 		225
(0.1) 		81.7
(-3) 		279
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2768
Sequence Type Exemplar sequence
Representative Public ID F59B10.1 NCBI
Target Description F59B10.1 /REP_DB=WormBase Gene ID /WP=CE23790 /TR=Q23567 /GB=CAA88990.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063861 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-47) (pqn-47) mRNA, complete cds. 11/11 None
F59B10.1 ENSEMBL cdna:known chromosome:CEL140:II:10496896:10502451:-1 gene:F59B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10497053-10502394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-47
Ensembl F59B10.1
Entrez Gene 174614 Entrez gene
SwissProt Q23567 EMBL-EBI
WormBase CE36940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88990 Hypothetical protein F59B10.1 [Caenorhabditis elegans] emb|CAA88602.3| Hypothetical protein F59B10.1 [Caenorhabditis elegans] ref|NP_496262.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-47) [Caenorhabditis elegans] 0.0
blast CAE59668 Hypothetical protein CBG03089 [Caenorhabditis briggsae] 0.0
blast CAD44121 Hypothetical protein F21A10.2b [Caenorhabditis elegans] ref|NP_741883.1| F21A10.2b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496262.2 1 657-679
F59B10.1 1 657-679
Sequence
Target Sequence 
>C. ELEGANS:182066_S_AT
agtcgtgagcaactgcggagcgttcccttcaacagagttcaaccacaaagtttgtccgtt
gagccgaactcaacaaagcgaatcaccggtaccaacttctacaagactatttgacaatat
cttcgagttatctatgggttccttcatccaatcagcctaccggttccgagtcggctactc
cactgaaacctgcttcagcgaggattcaaatggatcctacgaggagtacaatctgatctt
ttatcgcatgtgtaacccagttttcttcatcccccaactgtatttattttcaaatctata
cctcatctcctctcatttattcccccttctcttgtctcatggattccaaacaggctctcc
cgaattgatcagccaatatgtaaaaatgttgagtaaccaggacttcttcactcagataca
accaatctatgtcgacgaaacacttttcttgaaatttatgtactttttaatggatttttt
tttcaaaaattcaaacaacaacacacacaaagacctctatgaaaaactctccctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGTGAGCAACTGCGGAGCGTTC 296 61 2538 Antisense
GCGTTCCCTTCAACAGAGTTCAACC 467 289 2557 Antisense
CAAAGCGAATCACCGGTACCAACTT 509 189 2611 Antisense
CTATGGGTTCCTTCATCCAATCAGC 296 225 2669 Antisense
GAAACCTGCTTCAGCGAGGATTCAA 340 359 2722 Antisense
TCATCCCCCAACTGTATTTATTTTC 98 611 2804 Antisense
ATTTTCAAATCTATACCTCATCTCC 244 15 2823 Antisense
CTTCTCTTGTCTCATGGATTCCAAA 90 221 2863 Antisense
CAGGCTCTCCCGAATTGATCAGCCA 185 209 2888 Antisense
TAACCAGGACTTCTTCACTCAGATA 20 639 2931 Antisense
GACCTCTATGAAAAACTCTCCCTGA 208 383 3049 Antisense
Sequence Source Affymetrix Proprietary Database