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[182065_s_at]

Description T10D4.6 /REP_DB=WormBase Gene ID /WP=CE20046 /TR=Q9TZF5 /GB=AAC68722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      6grp_total > 36      4grp_total > 22      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 111.9
(-0.4)
P 		100.4
(-1)
A 		60
(-3)
A 		181.9
(3)
P 		122
B 148.6
(0.6)
P 		119.2
(-1)
A 		84.1
(-3)
A 		191.3
(3)
P 		107
C 155.6
(3)
P 		73.4
(-2.3)
A 		104.5
(-0.3)
P 		61.8
(-3)
P 		94
avr 138.7
(2.4) 		97.7
(-1.6) 		82.9
(-3) 		145
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 129.5
(1.8)
M 		144.5
(3)
P 		76.3
(-2.6)
A 		135.4
(2.3)
P 		70.8
(-3)
P 		95.3
(-1)
P 		74
B 89.4
(-2.2)
P 		126.4
(0.1)
P 		121.2
(-0.2)
A 		76.2
(-3)
P 		102.1
(-1.4)
P 		173.6
(3)
P 		97
C 145.4
(1)
P 		183.8
(3)
P 		106.3
(-1.1)
P 		70.4
(-3)
P 		109.8
(-0.9)
A 		107.4
(-1)
P 		113
avr 121.4
(-0.1) 		151.6
(3) 		101.3
(-2.2) 		94
(-3) 		94.2
(-3) 		125.4
(0.3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 40.8
(3)
P 		21.8
(-1.5)
A 		15.7
(-3)
A 		26.6
(-0.4)
P 		25
B 47.4
(3)
P 		29.4
(-0.9)
A 		19.5
(-3)
A 		40.8
(1.6)
P 		28
C 51.5
(3)
P 		21.1
(-1.4)
A 		36.4
(0.8)
P 		10.4
(-3)
P 		41
avr 46.6
(3) 		24.1
(-2.9) 		23.9
(-3) 		25.9
(-2.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 23.9
(-1.7)
M 		51.4
(3)
P 		16.6
(-3)
A 		34.3
(0.1)
P 		21.4
(-2.2)
P 		23.2
(-1.9)
P 		35
B 31.1
(-1.5)
P 		42.1
(-0)
P 		29.4
(-1.8)
A 		20.2
(-3)
P 		41.5
(-0.1)
P 		64.7
(3)
P 		45
C 53.9
(2.7)
P 		56.1
(3)
P 		27.1
(-1.2)
P 		14.2
(-3)
P 		35.5
(0.1)
A 		36
(0.1)
P 		42
avr 36.3
(-0) 		49.9
(3) 		24.4
(-2.7) 		22.9
(-3) 		32.8
(-0.8) 		41.3
(1.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182065_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5585
Sequence Type Exemplar sequence
Representative Public ID T10D4.6 NCBI
Target Description T10D4.6 /REP_DB=WormBase Gene ID /WP=CE20046 /TR=Q9TZF5 /GB=AAC68722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062051 NCBI Caenorhabditis elegans T10D4.6 (T10D4.6) mRNA, complete cds. 11/11 A 
SNAP00000032454 ENSEMBL cdna:SNAP chromosome:CEL140:II:3119340:3123098:1 9/11 None
GENEFINDER00000032469 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3119340:3123098:1 11/11 None
T10D4.6 ENSEMBL cdna:known chromosome:CEL140:II:3119326:3123169:1 gene:T10D4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3119338-3123097(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10D4.6
Entrez Gene 173659 Entrez gene
SwissProt Q9TZF5 EMBL-EBI
WormBase CE30170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68722 Hypothetical protein T10D4.6 [Caenorhabditis elegans] ref|NP_494452.2| T10D4.6 [Caenorhabditis elegans] 0.0
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182065_S_AT
ccagcggctcccttgattggaaaacttggactaagcctgacgtgattgcatgggctaagc
agtttttggaccagaagtattgggacacaattagcctgtcggacatgagtggacgtgatc
tggcagagattgtgttgggtggtcgggaagtctccaggaagttatactgggatttccaat
attttgaagctctacgagtcgagcttcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCGGCTCCCTTGATTGGAAAAC 478 273 2087 Antisense
GAAAACTTGGACTAAGCCTGACGTG 457 353 2106 Antisense
CCTGACGTGATTGCATGGGCTAAGC 213 265 2122 Antisense
GGGCTAAGCAGTTTTTGGACCAGAA 330 493 2138 Antisense
GGGACACAATTAGCCTGTCGGACAT 215 495 2168 Antisense
AGCCTGTCGGACATGAGTGGACGTG 10 83 2179 Antisense
ATGAGTGGACGTGATCTGGCAGAGA 518 45 2191 Antisense
GGCAGAGATTGTGTTGGGTGGTCGG 643 535 2208 Antisense
GGTGGTCGGGAAGTCTCCAGGAAGT 545 497 2224 Antisense
CCAATATTTTGAAGCTCTACGAGTC 99 277 2262 Antisense
AAGCTCTACGAGTCGAGCTTCATGC 685 147 2273 Antisense
Sequence Source Affymetrix Proprietary Database