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[182064_at]

Description T10D4.6 /REP_DB=WormBase Gene ID /WP=CE20046 /TR=Q9TZF5 /GB=AAC68722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 27      4grp_total > 39      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 331.1
(3)
P 		155.7
(-3)
P 		158.1
(-2.9)
A 		210.9
(-1.1)
A 		175
B 313.7
(3)
P 		194.5
(-0.8)
A 		126.3
(-3)
A 		182.9
(-1.2)
A 		187
C 369.2
(3)
P 		115.8
(-3)
A 		132.9
(-2.6)
A 		134
(-2.6)
A 		253
avr 338
(3) 		155.3
(-2.5) 		139.1
(-3) 		175.9
(-1.9) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 316.3
(3)
M 		252.2
(0.5)
P 		159.6
(-3)
A 		183.2
(-2.1)
P 		244.3
(0.2)
P 		302.4
(2.5)
P 		157
B 220.4
(-1.3)
P 		291.1
(3)
P 		192.1
(-3)
P 		192.5
(-3)
P 		216.4
(-1.5)
P 		221.7
(-1.2)
A 		99
C 248.8
(1)
P 		286
(3)
P 		247.1
(1)
P 		171.9
(-3)
M 		201.3
(-1.5)
P 		196.4
(-1.7)
M 		114
avr 261.8
(2.1) 		276.4
(3) 		199.6
(-1.9) 		182.5
(-3) 		220.7
(-0.6) 		240.2
(0.7) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 120.5
(3)
P 		33.8
(-2.8)
P 		41.3
(-2.3)
A 		30.9
(-3)
A 		90
B 100
(3)
P 		48
(-1.4)
A 		29.3
(-3)
A 		39
(-2.2)
A 		71
C 122.2
(3)
P 		33.3
(-2.4)
A 		46.3
(-1.6)
A 		22.6
(-3)
A 		100
avr 114.2
(3) 		38.4
(-2.5) 		39
(-2.4) 		30.8
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 58.3
(-0.4)
M 		89.7
(3)
P 		34.8
(-3)
A 		46.5
(-1.7)
P 		73.7
(1.3)
P 		73.6
(1.2)
P 		55
B 76.7
(0.6)
P 		96.9
(3)
P 		46.6
(-3)
P 		51
(-2.5)
P 		87.9
(1.9)
P 		82.7
(1.3)
A 		50
C 92.2
(3)
P 		87.3
(2.5)
P 		62.9
(-0.1)
P 		34.6
(-3)
M 		65.1
(0.2)
P 		65.7
(0.2)
M 		58
avr 75.7
(1) 		91.3
(3) 		48.1
(-2.5) 		44
(-3) 		75.6
(1) 		74
(0.8) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5585
Sequence Type Exemplar sequence
Representative Public ID T10D4.6 NCBI
Target Description T10D4.6 /REP_DB=WormBase Gene ID /WP=CE20046 /TR=Q9TZF5 /GB=AAC68722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062051 NCBI Caenorhabditis elegans T10D4.6 (T10D4.6) mRNA, complete cds. 11/11 A 
SNAP00000032454 ENSEMBL cdna:SNAP chromosome:CEL140:II:3119340:3123098:1 11/11 None
GENEFINDER00000032469 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3119340:3123098:1 11/11 None
T10D4.6 ENSEMBL cdna:known chromosome:CEL140:II:3119326:3123169:1 gene:T10D4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3119338-3123097(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10D4.6
Entrez Gene 173659 Entrez gene
SwissProt Q9TZF5 EMBL-EBI
WormBase CE30170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68722 Hypothetical protein T10D4.6 [Caenorhabditis elegans] ref|NP_494452.2| T10D4.6 [Caenorhabditis elegans] 0.0
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182064_AT
gacttgcgctcatcaatggacgccgatcctgcgacggaaaaaagagctactgaagaaaga
tcagagagttctagatctttgcctccaacagtcgatgtatcctctcctccacctgttgcc
agctcatcgtgctcaccgtatccagcattgttggcgtctgccgatgcttcacctcaagta
ccagcatgggcttcagccagatcttccatttctcgttccactccagtggggcgaaatatt
caagctcacttacagcctaaactggagccagtcgatgacgaaatcaggtttctgggtttt
aaaagtgcaagtacgcctcaaaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTGCGCTCATCAATGGACGCCG 218 371 1714 Antisense
GACGCCGATCCTGCGACGGAAAAAA 106 381 1732 Antisense
GCTCACCGTATCCAGCATTGTTGGC 670 299 1844 Antisense
CGATGCTTCACCTCAAGTACCAGCA 383 249 1875 Antisense
CAAGTACCAGCATGGGCTTCAGCCA 67 185 1888 Antisense
CATGGGCTTCAGCCAGATCTTCCAT 339 209 1898 Antisense
TCTCGTTCCACTCCAGTGGGGCGAA 421 609 1924 Antisense
GGGGCGAAATATTCAAGCTCACTTA 519 497 1941 Antisense
AGCTCACTTACAGCCTAAACTGGAG 395 79 1956 Antisense
GGAGCCAGTCGATGACGAAATCAGG 356 513 1977 Antisense
AAGTGCAAGTACGCCTCAAAAAGTG 417 159 2016 Antisense
Sequence Source Affymetrix Proprietary Database