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[182063_at]

Description Y46G5A.7 /REP_DB=WormBase Gene ID /WP=CE24304 /TR=Q9U2F9 /GB=CAB60352.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 50.3
(2.3)
P 		27.4
(-0.5)
A 		6
(-3)
A 		56.4
(3)
A 		50
B 7.5
(-2.8)
A 		15.9
(-1.4)
A 		6.4
(-3)
A 		41.3
(3)
P 		35
C 6.5
(-3)
A 		40.4
(3)
A 		37.5
(2.5)
A 		24.4
(0.2)
A 		34
avr 21.4
(-1.8) 		27.9
(-0.2) 		16.6
(-3) 		40.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 44.4
(0.3)
A 		26.2
(-2.1)
A 		19.2
(-3)
A 		64.5
(3)
P 		32.9
(-1.2)
P 		30.3
(-1.5)
A 		45
B 39.4
(-0.2)
A 		31.4
(-1.4)
A 		31.8
(-1.4)
A 		29.5
(-1.7)
P 		21.6
(-3)
P 		59.4
(3)
P 		38
C 27.4
(-3)
P 		28.9
(-2.8)
A 		29
(-2.8)
A 		57
(1.3)
A 		31.1
(-2.5)
A 		68.7
(3)
P 		41
avr 37.1
(-0.6) 		28.8
(-2.5) 		26.7
(-3) 		50.3
(2.4) 		28.5
(-2.6) 		52.8
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.3
(3)
P 		5.9
(-1.5)
A 		1.6
(-3)
A 		8.3
(-0.6)
A 		17
B 2.4
(-2.3)
A 		3.9
(-1)
A 		1.5
(-3)
A 		8.8
(3)
P 		7
C 2.1
(-3)
A 		11.6
(2.2)
A 		13.1
(3)
A 		4.1
(-1.9)
A 		11
avr 7.6
(3) 		7.1
(1.6) 		5.4
(-3) 		7.1
(1.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.2
(-1)
A 		9.3
(-0.5)
A 		4.2
(-3)
A 		16.4
(3)
P 		9.9
(-0.2)
P 		7.4
(-1.4)
A 		12
B 13.7
(-0.5)
A 		10.4
(-1.9)
A 		7.7
(-3)
A 		7.8
(-3)
P 		8.8
(-2.5)
P 		22.2
(3)
P 		15
C 10.2
(-1.9)
P 		8.8
(-2.5)
A 		7.4
(-3)
A 		11.5
(-1.4)
A 		10.1
(-2)
A 		23
(3)
P 		16
avr 10.7
(-0.7) 		9.5
(-1.3) 		6.4
(-3) 		11.9
(-0) 		9.6
(-1.3) 		17.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2695
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.7 NCBI
Target Description Y46G5A.7 /REP_DB=WormBase Gene ID /WP=CE24304 /TR=Q9U2F9 /GB=CAB60352.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064312
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y46G5A.7 ENSEMBL cdna:known chromosome:CEL140:II:12754506:12756091:-1 gene:Y46G5A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064312 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039045 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12754502-12756050(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y46G5A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60352 Hypothetical protein Y46G5A.7 [Caenorhabditis elegans] ref|NP_496713.2| Y46G5A.7 [Caenorhabditis elegans] 1.0E-154
blast CAA93768 Hypothetical protein C47D12.4 [Caenorhabditis elegans] ref|NP_496494.1| C47D12.4 [Caenorhabditis elegans] 1.0E-103
blast CAI79250 Hypothetical protein Y46G5A.39 [Caenorhabditis elegans] ref|NP_001022443.1| Y46G5A.39 [Caenorhabditis elegans] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.3E-6
Sequence
Target Sequence 
>C. ELEGANS:182063_AT
aagtaaagcgactcgtttgacagtgaggaggacggcacataatattcaattgcatgatat
tgatttgatggtacattgtacgagtgtgacattgagtgggattaatttggacagtgatca
cttaaacgtactcgtcaagaaatggaaggaaaacagcagtctggaatactttgttgcggg
acaaatggaatcgcctcttgaaaaatctgtcattcttgaagggacaaactctagacaacg
atctgaggatactcggctttatagatatgagaattacgaatttctcacaacatgcaacaa
tggaaaggtatctgacttaacaatttttgagaattgcttcttcctcttcgttttcgcaca
aatggaatcgcaccttgaaaaatctgtcattcttgaagggaccaactctagacaacaatt
tgagcattacaaatttctcacaacatgcaagaaaggaaaggtttctcaatttacaactct
tccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTAAAGCGACTCGTTTGACAGTG 52 149 480 Antisense
GCGACTCGTTTGACAGTGAGGAGGA 297 289 487 Antisense
GAGGAGGACGGCACATAATATTCAA 681 403 504 Antisense
GGTACATTGTACGAGTGTGACATTG 165 503 549 Antisense
ACGAGTGTGACATTGAGTGGGATTA 570 93 559 Antisense
TGAGTGGGATTAATTTGGACAGTGA 52 565 572 Antisense
TCCTCTTCGTTTTCGCACAAATGGA 291 593 821 Antisense
GCACAAATGGAATCGCACCTTGAAA 220 315 835 Antisense
AAGGGACCAACTCTAGACAACAATT 176 159 875 Antisense
ATTTGAGCATTACAAATTTCTCACA 616 17 897 Antisense
GGTTTCTCAATTTACAACTCTTCCG 644 505 939 Antisense
Sequence Source Affymetrix Proprietary Database