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[182062_at]

Description W03G9.2 /REP_DB=WormBase Gene ID /WP=CE14556 /TR=O44749 /GB=AAB96736.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 30      6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 126
(0.4)
P 		63.7
(-3)
A 		138.3
(1)
P 		174.9
(3)
P 		111
B 109.2
(-3)
A 		168.3
(2.4)
P 		175.4
(3)
P 		161
(1.7)
P 		66
C 81.5
(-3)
P 		128
(0.2)
P 		163.1
(2.6)
P 		169.3
(3)
P 		88
avr 105.6
(-3) 		120
(-1.6) 		158.9
(2.1) 		168.4
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 81.2
(-2.7)
A 		62.5
(-3)
A 		152.4
(-1.6)
P 		224.2
(-0.4)
P 		328.2
(1.2)
P 		438.1
(3)
P 		376
B 86.3
(-2.9)
A 		81.3
(-3)
A 		128.5
(-2.3)
A 		200.7
(-1.2)
P 		334.4
(0.8)
P 		484.4
(3)
P 		403
C 108.3
(-2.8)
A 		94.6
(-3)
A 		101.7
(-2.9)
P 		296.8
(-0.3)
P 		385.3
(0.9)
P 		543.3
(3)
P 		449
avr 91.9
(-2.8) 		79.5
(-3) 		127.5
(-2.3) 		240.6
(-0.6) 		349.3
(1) 		488.6
(3) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 45.9
(3)
P 		13.8
(-3)
A 		36.2
(1.2)
P 		25.6
(-0.8)
P 		32
B 34.8
(-2.6)
A 		41.6
(3)
P 		40.6
(2.2)
P 		34.3
(-3)
P 		7
C 27
(-3)
P 		36.8
(-1)
P 		56.8
(3)
P 		28.6
(-2.7)
P 		30
avr 35.9
(-0.4) 		30.7
(-2.5) 		44.5
(3) 		29.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 15
(-3)
A 		22.2
(-2.5)
A 		33.2
(-1.8)
P 		56.9
(-0.3)
P 		99
(2.5)
P 		106.7
(3)
P 		92
B 30
(-2.9)
A 		27
(-3)
A 		31.2
(-2.8)
A 		53.1
(-2)
P 		135.9
(1.3)
P 		180.6
(3)
P 		154
C 40.1
(-2.5)
A 		28.9
(-2.9)
A 		25.9
(-3)
P 		59.7
(-1.7)
P 		124.7
(0.8)
P 		181.9
(3)
P 		156
avr 28.4
(-2.9) 		26
(-3) 		30.1
(-2.8) 		56.6
(-1.6) 		119.9
(1.3) 		156.4
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1477
Sequence Type Exemplar sequence
Representative Public ID W03G9.2 NCBI
Target Description W03G9.2 /REP_DB=WormBase Gene ID /WP=CE14556 /TR=O44749 /GB=AAB96736.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059087 NCBI Caenorhabditis elegans W03G9.2 (W03G9.2) mRNA, complete cds. 11/11 None
SNAP00000033391 ENSEMBL cdna:SNAP chromosome:CEL140:I:4962453:4964239:1 11/11 None
GENEFINDER00000033402 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4962453:4964239:1 11/11 None
W03G9.2 ENSEMBL cdna:known chromosome:CEL140:I:4962453:4964239:1 gene:W03G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4962452-4964239(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03G9.2
Entrez Gene 189170 Entrez gene
SwissProt O44749 EMBL-EBI
WormBase CE14556 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491488 W03G9.2 [Caenorhabditis elegans] gb|AAB96736.1| Hypothetical protein W03G9.2 [Caenorhabditis elegans] 0.0
blast CAE73104 Hypothetical protein CBG20484 [Caenorhabditis briggsae] 2.0E-85
blast NP_504162 Y45G5AM.2 [Caenorhabditis elegans] gb|AAG23366.3| Hypothetical protein Y45G5AM.2 [Caenorhabditis elegans] 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:182062_AT
gtcaatgttattttgtgcctccaggagtttcaggaagagggtacaatgttccgaagagct
cgtcatgtctgtggtattcgtcctcacaaaagtcaacccggactcgatttgtatatcgag
attgacacaggaagtatgagagctctgaagacgaattatctgactgtgagaaaattgccg
caggagttcgcgaatgtcccaactccaatccttgaagttcgatttgaaggtgccaagacc
gaagaagatgttgcccggagaatcgcgcacatcaggaaaacgggtcgtgcatacatcaaa
tcatttgatacaggaaaacggaagatctaccagaacagcttttttaatggccagccaaag
gattggagtaacatcgaaacagctgtgttgctgccaccaaaagaaagctcaatgtcgaag
ctgttctgtgaggatagggattgcatgggactatgctgcacagatcaatggcttgaaaat
gcggaatcatccccgggcatctccacaattccagcgtcatggatcgccgataagaataag
aagccattcgtggacagatctccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATGTTATTTTGTGCCTCCAGG 653 463 946 Antisense
GAGCTCGTCATGTCTGTGGTATTCG 533 387 1001 Antisense
TTCGTCCTCACAAAAGTCAACCCGG 598 695 1022 Antisense
GTCAACCCGGACTCGATTTGTATAT 598 457 1037 Antisense
TGCCGCAGGAGTTCGCGAATGTCCC 667 583 1121 Antisense
GTCCCAACTCCAATCCTTGAAGTTC 57 475 1141 Antisense
GAAGATGTTGCCCGGAGAATCGCGC 641 337 1189 Antisense
CGAAACAGCTGTGTTGCTGCCACCA 322 253 1320 Antisense
GAAAATGCGGAATCATCCCCGGGCA 626 351 1420 Antisense
AATTCCAGCGTCATGGATCGCCGAT 656 177 1452 Antisense
AAGCCATTCGTGGACAGATCTCCGC 438 149 1486 Antisense
Sequence Source Affymetrix Proprietary Database