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[182061_at]

Description T07D3.6 /REP_DB=WormBase Gene ID /WP=CE13365 /TR=O16721 /GB=AAB66186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 73
(-0.1)
A 		27.1
(-3)
A 		65.2
(-0.6)
A 		121.3
(3)
A 		94
B 98
(3)
P 		28.4
(-3)
A 		59.8
(-0.3)
A 		63.1
(-0)
P 		70
C 77.8
(2.9)
P 		53.2
(0.3)
A 		22.6
(-3)
A 		78.4
(3)
A 		56
avr 82.9
(2.5) 		36.2
(-3) 		49.2
(-1.5) 		87.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 109.2
(3)
A 		42.6
(-1)
A 		8.8
(-3)
A 		66
(0.4)
P 		52.9
(-0.4)
A 		24.4
(-2.1)
A 		100
B 41.1
(0.2)
A 		66.1
(2.6)
A 		7.7
(-3)
A 		70.5
(3)
A 		43.2
(0.4)
A 		27.7
(-1.1)
A 		63
C 42.8
(-2)
A 		33.2
(-2.7)
A 		75.2
(0.4)
A 		109.5
(3)
A 		29.6
(-3)
A 		70
(0)
P 		80
avr 64.4
(0.9) 		47.3
(-1.1) 		30.6
(-3) 		82
(3) 		41.9
(-1.7) 		40.7
(-1.8) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.6
(3)
A 		5.9
(-3)
A 		17.1
(0.2)
A 		17.8
(0.4)
A 		21
B 31.2
(3)
P 		7
(-3)
A 		13.9
(-1.3)
A 		13.5
(-1.4)
P 		24
C 25.8
(3)
P 		15.3
(-0.5)
A 		7.9
(-3)
A 		13.2
(-1.2)
A 		18
avr 27.9
(3) 		9.4
(-3) 		13
(-1.8) 		14.8
(-1.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 20.1
(3)
A 		15.1
(1.4)
A 		1.9
(-3)
A 		16.7
(1.9)
P 		16
(1.6)
A 		5.9
(-1.7)
A 		18
B 14.3
(0.7)
A 		22
(3)
A 		1.9
(-3)
A 		18.7
(2)
A 		17.5
(1.7)
A 		10.3
(-0.5)
A 		20
C 15.9
(-0.3)
A 		10.1
(-2.8)
A 		19.1
(1.1)
A 		22
(2.4)
A 		9.6
(-3)
A 		23.4
(3)
P 		14
avr 16.8
(1.8) 		15.7
(1.2) 		7.6
(-3) 		19.1
(3) 		14.4
(0.5) 		13.2
(-0.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4768
Sequence Type Exemplar sequence
Representative Public ID T07D3.6 NCBI
Target Description T07D3.6 /REP_DB=WormBase Gene ID /WP=CE13365 /TR=O16721 /GB=AAB66186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061437(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061437 NCBI Caenorhabditis elegans T07D3.6 (T07D3.6) mRNA, complete cds. 9/11 None
GENEFINDER00000029319 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:880944:886155:1 10/11 None
T07D3.6 ENSEMBL cdna:known chromosome:CEL140:II:880920:882211:1 gene:T07D3.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029306 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:880918-883811(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.6
Entrez Gene 188224 Entrez gene
SwissProt O16721 EMBL-EBI
WormBase CE36193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66186 Hypothetical protein T07D3.6 [Caenorhabditis elegans] ref|NP_493838.2| T07D3.6 [Caenorhabditis elegans] 1.0E-172
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 1.0E-132
blast AAB66186 Hypothetical protein T07D3.6 [Caenorhabditis elegans] ref|NP_493838.2| T07D3.6 [Caenorhabditis elegans] 1.0E-123
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 1.0E-108
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 4.0E-91
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 5.2E-27
Pfam IPR009644 EMBL-EBI Fukutin-related 7.3E-12
Pfam IPR009644 EMBL-EBI Fukutin-related 3.6E-21
Pfam IPR009644 EMBL-EBI Fukutin-related 8.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493838.2 1 42-59
T07D3.6 1 42-59
GENEFINDER00000029319 1 35-52
Sequence
Target Sequence 
>C. ELEGANS:182061_AT
taaatcactctcccataacatacttaaattcaaaattggacataattttctacgaaaacg
accctctcagggattacttggatctaaaatcagaagttcggaggctgattcctaaaaaat
ttcagactcactgggttgacaatatagaaattccgacgaatatcaagcagttctctgaat
tttggaagcgctcaaagtttattgattgtttgaaattaaaagttccacgagaagaatctt
atgtcttcatgccagcggaagcagctgtaaatgagctcgcgcagctccgcgacgagctca
tcgagttcgaaatgtacccatttctcagcggcgggacatttctcggctggtaccctgacg
gcaccaaatacaagtacacctaccctatctacgatccctggtgtgctgcagactttaacg
gtcatattttctgggtctcttgcattccgctggagaaacttgtggcagaatacggagagt
tttggaatttggaccaccagtcatctgaattcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATCACTCTCCCATAACATACTT 337 641 398 Antisense
TCTACGAAAACGACCCTCTCAGGGA 157 609 446 Antisense
ACCCTCTCAGGGATTACTTGGATCT 126 89 458 Antisense
AGAAGTTCGGAGGCTGATTCCTAAA 13 73 489 Antisense
CCGACGAATATCAAGCAGTTCTCTG 708 263 550 Antisense
AGTTCTCTGAATTTTGGAAGCGCTC 519 63 566 Antisense
TGTCTTCATGCCAGCGGAAGCAGCT 664 557 639 Antisense
TGTAAATGAGCTCGCGCAGCTCCGC 345 559 663 Antisense
TCAGCGGCGGGACATTTCTCGGCTG 232 623 722 Antisense
GTCTCTTGCATTCCGCTGGAGAAAC 510 469 832 Antisense
GGACCACCAGTCATCTGAATTCGAG 115 523 888 Antisense
Sequence Source Affymetrix Proprietary Database