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[182060_at]

Description F08B4.1 /REP_DB=WormBase Gene ID /WP=CE07042 /TR=Q19198 /GB=AAB37727.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_high_8_8 > 50      6grp_highest_nonorm > 90      6grp_total > 61      4grp_total > 62      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 172.1
(3)
P 		89.9
(-3)
A 		138
(0.5)
P 		127
(-0.3)
P 		82
B 145.8
(3)
P 		129.9
(1.4)
P 		139.6
(2.4)
P 		87
(-3)
P 		59
C 185.6
(3)
P 		167.9
(1.8)
P 		173.2
(2.2)
P 		96.2
(-3)
M 		89
avr 167.8
(3) 		129.2
(-0.6) 		150.3
(1.4) 		103.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 129.8
(-3)
P 		175.4
(0.7)
P 		132.4
(-2.8)
P 		203.3
(3)
P 		154.8
(-1)
P 		160.5
(-0.5)
P 		74
B 135.1
(-1.9)
P 		127.2
(-2.5)
P 		195.8
(3)
P 		180.7
(1.8)
P 		138.5
(-1.6)
P 		121.6
(-3)
P 		74
C 174.9
(1.1)
P 		174.6
(1)
P 		200.9
(3)
P 		171.3
(0.8)
P 		185.7
(1.9)
P 		120.9
(-3)
P 		80
avr 146.6
(-1.5) 		159.1
(-0.1) 		176.4
(2) 		185.1
(3) 		159.7
(-0) 		134.3
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 62.7
(3)
P 		19.5
(-2.9)
A 		36.1
(-0.6)
P 		18.6
(-3)
P 		44
B 46.5
(3)
P 		32.1
(-0.1)
P 		32.3
(-0)
P 		18.5
(-3)
P 		28
C 61.4
(3)
P 		48.3
(1.3)
P 		60.4
(2.9)
P 		16.2
(-3)
M 		45
avr 56.9
(3) 		33.3
(-0.6) 		42.9
(0.9) 		17.8
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 23.9
(-3)
P 		62.4
(3)
P 		28.8
(-2.2)
P 		51.6
(1.3)
P 		46.7
(0.6)
P 		39.1
(-0.6)
P 		39
B 47
(-1)
P 		42.3
(-3)
P 		47.5
(-0.8)
P 		47.9
(-0.6)
P 		56.3
(3)
P 		45.4
(-1.7)
P 		14
C 64.8
(3)
P 		53.3
(0.7)
P 		51.1
(0.3)
P 		34.4
(-3)
P 		60.1
(2.1)
P 		40.5
(-1.8)
P 		30
avr 45.2
(-1.3) 		52.7
(2.2) 		42.5
(-2.6) 		44.6
(-1.6) 		54.4
(3) 		41.7
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10194
Sequence Type Exemplar sequence
Representative Public ID F08B4.1 NCBI
Target Description F08B4.1 /REP_DB=WormBase Gene ID /WP=CE07042 /TR=Q19198 /GB=AAB37727.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027947(11), NM_001027946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027947 NCBI Caenorhabditis elegans human DICE1 (Deleted In Cancer) homolog family member (dic-1) (dic-1) mRNA, complete cds. 11/11 None
NM_001027946 NCBI Caenorhabditis elegans human DICE1 (Deleted In Cancer) homolog family member (dic-1) (dic-1) mRNA, complete cds. 11/11 None
SNAP00000025371 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8692480:8696116:1 11/11 None
GENEFINDER00000025382 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8692112:8702634:1 11/11 None
F08B4.1b ENSEMBL cdna:known chromosome:CEL140:IV:8692081:8696425:1 gene:F08B4.1 11/11 None
F08B4.1a ENSEMBL cdna:known chromosome:CEL140:IV:8692112:8696116:1 gene:F08B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8692117-8694979(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08B4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05577 Human dice1 (deleted in cancer) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023118.1| human DICE1 (Deleted In Cancer) homolog family member (dic-1) [Caenorhabditis elegans] 0.0
blast AAB37727 Human dice1 (deleted in cancer) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023117.1| human DICE1 (Deleted In Cancer) homolog family member (dic-1) [Caenorhabditis elegans] 0.0
blast AAM98008 Hypothetical protein H23L24.3b [Caenorhabditis elegans] ref|NP_741471.2| H23L24.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 2.2E-63
Sequence
Target Sequence 
>C. ELEGANS:182060_AT
gaatcatactttcacactgttccattctactacaatacgcaaatccgtgtttgtttggac
aagttcgatgtgaaagtagattattcgagctcaatgagcatgttttatccaggtcaacta
ctgagtaatctgaatcgatttaaagcaaaagcaagagaagaattagatcaaatggctatc
gcctccaagttaaatgattcaaagactctgaaaatagttaatccttctatccgaatcgaa
cgaatcacatccagatctaccattattgggttaggaaacagtgaagttgatattgaggat
gatagtctagaaggatatgagtctactcctatttatgcaggagatttcaagattccactt
tacccaccatctattactgatgctcagttggattctgcttaccgtactccttactcttca
cctattgaagatcttaccagcaagctgaacagaattcaagcgaatatcgaattgatgttt
gatccgaacaagattactctcctcgatatggcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATACTTTCACACTGTTCCAT 319 327 1270 Antisense
ACTGTTCCATTCTACTACAATACGC 241 97 1285 Antisense
GAGCATGTTTTATCCAGGTCAACTA 485 389 1365 Antisense
GATCAAATGGCTATCGCCTCCAAGT 250 421 1435 Antisense
GTTAATCCTTCTATCCGAATCGAAC 22 447 1486 Antisense
GAACGAATCACATCCAGATCTACCA 594 347 1507 Antisense
GATTTCAAGATTCCACTTTACCCAC 193 425 1612 Antisense
ACTTTACCCACCATCTATTACTGAT 114 103 1626 Antisense
TCAGTTGGATTCTGCTTACCGTACT 630 615 1653 Antisense
ACTCCTTACTCTTCACCTATTGAAG 442 97 1675 Antisense
AAGATTACTCTCCTCGATATGGCTA 639 155 1759 Antisense
Sequence Source Affymetrix Proprietary Database