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[182058_at]

Description C27A2.1 /REP_DB=WormBase Gene ID /WP=CE27096 /TR=Q18237 /GB=AAK31464.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 364.4
(3)
P 		355.2
(2.6)
P 		342.7
(2)
P 		231.8
(-3)
P 		133
B 437.3
(3)
P 		367.9
(0.7)
P 		318.9
(-0.9)
P 		254.2
(-3)
P 		183
C 373
(0.3)
P 		274.6
(-3)
P 		455
(3)
P 		308.6
(-1.9)
P 		180
avr 391.6
(3) 		332.6
(0.2) 		372.2
(2.1) 		264.9
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1023
1 2 3 4 5 6 range
A 338
(-3)
P 		475.6
(-2.2)
P 		442.3
(-2.4)
P 		725
(-0.6)
P 		658.8
(-1)
P 		1318.3
(3)
P 		980
B 387.8
(-2.2)
P 		295.3
(-3)
P 		403.2
(-2.1)
P 		516.7
(-1.2)
P 		599.9
(-0.5)
P 		1033.5
(3)
P 		738
C 376.8
(-3)
P 		394.6
(-2.9)
P 		540.5
(-1.6)
P 		939.6
(1.7)
P 		639.3
(-0.8)
P 		1093.2
(3)
P 		716
avr 367.5
(-3) 		388.5
(-2.8) 		462
(-2.3) 		727.1
(-0.2) 		632.7
(-1) 		1148.3
(3) 		781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 132.7
(3)
P 		77.1
(-0.4)
P 		89.6
(0.4)
P 		33.9
(-3)
P 		99
B 139.5
(3)
P 		90.9
(-0.4)
P 		73.9
(-1.6)
P 		54.2
(-3)
P 		85
C 123.5
(1)
P 		79
(-1.5)
P 		158.6
(3)
P 		52
(-3)
P 		107
avr 131.9
(3) 		82.3
(-0.5) 		107.4
(1.3) 		46.7
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 62.3
(-3)
P 		169.2
(-0.5)
P 		96.3
(-2.2)
P 		183.9
(-0.2)
P 		198.8
(0.2)
P 		321
(3)
P 		259
B 134.9
(-2.2)
P 		98.3
(-3)
P 		97.9
(-3)
P 		136.8
(-2.2)
P 		243.7
(0)
P 		385.4
(3)
P 		288
C 139.7
(-2.5)
P 		120.4
(-3)
P 		137.6
(-2.6)
P 		189
(-1.3)
P 		206.9
(-0.9)
P 		366
(3)
P 		246
avr 112.3
(-3) 		129.3
(-2.5) 		110.6
(-3) 		169.9
(-1.6) 		216.5
(-0.4) 		357.5
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5007
Sequence Type Exemplar sequence
Representative Public ID C27A2.1 NCBI
Target Description C27A2.1 /REP_DB=WormBase Gene ID /WP=CE27096 /TR=Q18237 /GB=AAK31464.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062534 NCBI Caenorhabditis elegans C27A2.1 (C27A2.1) mRNA, complete cds. 11/11 None
SNAP00000044051 ENSEMBL cdna:SNAP chromosome:CEL140:II:5062121:5066954:1 11/11 None
GENEFINDER00000044061 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5062121:5066954:1 11/11 None
C27A2.1 ENSEMBL cdna:known chromosome:CEL140:II:5062121:5067075:1 gene:C27A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060107 1/11 Cross Hyb Matching Probes A 
SNAP00000008774 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008781 1/11 Cross Hyb Matching Probes None
F46A9.6.1 1/11 Cross Hyb Matching Probes A 
F46A9.6.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5062118-5066952(+) 93.25 96.28
Public Domain and Genome References
Gene Title
Ensembl C27A2.1
Entrez Gene 173874 Entrez gene
SwissProt Q18237 EMBL-EBI
WormBase CE27096 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7059 chromosome segregation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494935 C27A2.1 [Caenorhabditis elegans] gb|AAK31464.1| Hypothetical protein C27A2.1 [Caenorhabditis elegans] 0.0
blast T15650 hypothetical protein C27A2.1 - Caenorhabditis elegans 0.0
blast CAE59031 Hypothetical protein CBG02311 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003395 EMBL-EBI SMC protein, N-terminal 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:182058_AT
gaaaaccgtgcacgtatccacgataaactaggtgatgagatcaacaattggcgtaaggaa
gttgagacaatgattgaacaaatcaatgtaaactacgttcaattctttgattctcttggt
tgtcgcggagaagttagtcttgaagttcccgaaaatccactggatattgaaaaatatgga
atcatgattatggtgtgcttccgcaaaggagaaagtatgaaacgtcttgacaataaagtt
caatctggaggtgaacgaagtgtggctacgatgctttatcttctggctctacaacaatta
tgcccagttccattcagatgtattgatgagattaatcagggaatggatcctacaaacgaa
cggaaagtgtttgatattatggttggaatgtggaatggaaccactggaacactttccaaa
actcaatactttttgctctctccaaaacttcttcatggtttggatatgcgcgaaaatgtg
aacattgttatggtgaatagtacactcaccaattctcatggaaagcattacgacaccagt
gccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACCGTGCACGTATCCACGATA 462 353 2893 Antisense
TTCTTTGATTCTCTTGGTTGTCGCG 329 691 2995 Antisense
GAAGTTCCCGAAAATCCACTGGATA 70 337 3034 Antisense
TCATGATTATGGTGTGCTTCCGCAA 277 623 3074 Antisense
GTGTGGCTACGATGCTTTATCTTCT 664 487 3152 Antisense
CTTTATCTTCTGGCTCTACAACAAT 295 223 3166 Antisense
AATTATGCCCAGTTCCATTCAGATG 138 175 3188 Antisense
GGAATGGAACCACTGGAACACTTTC 692 531 3284 Antisense
AAACTCAATACTTTTTGCTCTCTCC 98 129 3311 Antisense
AATAGTACACTCACCAATTCTCATG 452 173 3388 Antisense
GAAAGCATTACGACACCAGTGCCAA 27 361 3413 Antisense
Sequence Source Affymetrix Proprietary Database