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[182057_at]

Description K07A12.5 /REP_DB=WormBase Gene ID /WP=CE25934 /TR=P90870 /GB=CAB03185.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 19
(3)
A 		13.3
(-0.2)
A 		8.4
(-3)
A 		9.9
(-2.2)
A 		11
B 12.8
(-1.3)
A 		19.4
(3)
A 		10.2
(-3)
A 		13.1
(-1.1)
A 		9
C 12.6
(-2.2)
A 		12.7
(-2.2)
A 		6.7
(-3)
A 		52.4
(3)
A 		46
avr 14.8
(-0.7) 		15.1
(-0.6) 		8.4
(-3) 		25.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 30.2
(-1.8)
A 		7.1
(-3)
A 		15.8
(-2.6)
A 		12.2
(-2.7)
A 		20
(-2.3)
A 		123.8
(3)
A 		117
B 6.8
(-3)
A 		9.2
(-2.8)
A 		8
(-2.9)
A 		14.7
(-2.5)
A 		49.5
(-0.3)
A 		100.8
(3)
A 		94
C 11.3
(-2.8)
A 		15.9
(-2.5)
A 		8.5
(-3)
A 		15
(-2.6)
A 		15.9
(-2.5)
A 		96.2
(3)
A 		88
avr 16.1
(-2.7) 		10.7
(-3) 		10.8
(-3) 		14
(-2.8) 		28.5
(-1.9) 		106.9
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.9
(3)
A 		2.9
(-1.4)
A 		2.2
(-2.2)
A 		1.5
(-3)
A 		5
B 4.1
(1.3)
A 		4.8
(3)
A 		2.4
(-3)
A 		2.8
(-2)
A 		2
C 4.2
(-1.2)
A 		3.6
(-1.8)
A 		2.3
(-3)
A 		8.8
(3)
A 		7
avr 5.1
(3) 		3.8
(0.2) 		2.3
(-3) 		4.4
(1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.6
(-2.3)
A 		2.5
(-3)
A 		3.4
(-2.8)
A 		3.1
(-2.9)
A 		6
(-2.2)
A 		30.1
(3)
A 		28
B 2.4
(-2.9)
A 		3.1
(-2.8)
A 		2
(-3)
A 		3.9
(-2.7)
A 		20.1
(0.1)
A 		37.6
(3)
A 		36
C 4.2
(-2.6)
A 		4.8
(-2.5)
A 		2.2
(-3)
A 		3
(-2.8)
A 		5.2
(-2.4)
A 		32.2
(3)
A 		30
avr 4.1
(-2.7) 		3.5
(-2.8) 		2.5
(-3) 		3.3
(-2.8) 		10.4
(-1.5) 		33.3
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.444
Sequence Type Exemplar sequence
Representative Public ID K07A12.5 NCBI
Target Description K07A12.5 /REP_DB=WormBase Gene ID /WP=CE25934 /TR=P90870 /GB=CAB03185.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059952 NCBI Caenorhabditis elegans K07A12.5 (K07A12.5) mRNA, complete cds. 11/11 None
SNAP00000033552 ENSEMBL cdna:SNAP chromosome:CEL140:I:8701618:8702599:-1 11/11 None
GENEFINDER00000033555 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8701618:8702599:-1 11/11 None
K07A12.5 ENSEMBL cdna:known chromosome:CEL140:I:8701618:8702771:-1 gene:K07A12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8701548-8702702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A12.5
Entrez Gene 187086 Entrez gene
SwissProt P90870 EMBL-EBI
WormBase CE38204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03185 Hypothetical protein K07A12.5 [Caenorhabditis elegans] emb|CAB03085.3| Hypothetical protein K07A12.5 [Caenorhabditis elegans] ref|NP_492353.2| K07A12.5 [Caenorhabditis elegans] 0.0
blast CAB03185 Hypothetical protein K07A12.5 [Caenorhabditis elegans] emb|CAB03085.3| Hypothetical protein K07A12.5 [Caenorhabditis elegans] ref|NP_492353.2| K07A12.5 [Caenorhabditis elegans] 1.0E-172
blast CAB03185 Hypothetical protein K07A12.5 [Caenorhabditis elegans] emb|CAB03085.3| Hypothetical protein K07A12.5 [Caenorhabditis elegans] ref|NP_492353.2| K07A12.5 [Caenorhabditis elegans] 1.0E-147
blast CAE66950 Hypothetical protein CBG12342 [Caenorhabditis briggsae] 1.0E-107
blast CAE66950 Hypothetical protein CBG12342 [Caenorhabditis briggsae] 2.0E-83
blast CAE66950 Hypothetical protein CBG12342 [Caenorhabditis briggsae] 8.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182057_AT
agaagttttagagccaacagccccgatggagaaattcgttgtgaataccactgacgacaa
aagagccctgttcccagccagttggtatcaacaaccgatttcccgttcgcaattgaagaa
aggaaagatgatttattggatggcaaaagacgaagaagaggatatgacgttggacgatga
tccagagggaaagtacacggttactgctgaaaagttgattgagacaatgactgctggggg
gaaagttaaacatgctggaataacagaaccacctagcaacacagcaaacaccatcatgtc
cgagtccttggcatcaattaatgcgagatacaagaagagttgtgaaagaaatgctgtttt
catgaataccttgcacggtactattgaattcaacaagaaacaagtatctgtagataaaac
cctctctacaagttcaataagccaggatgatgcgaccgacgctccgaatcaaatcatttt
tgctccaacaatcacttctcatgttttcaaaggccgatctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTTTTAGAGCCAACAGCCCCG 193 73 315 Antisense
TGACGACAAAAGAGCCCTGTTCCCA 531 569 366 Antisense
CTGTTCCCAGCCAGTTGGTATCAAC 26 239 382 Antisense
TATCAACAACCGATTTCCCGTTCGC 472 657 400 Antisense
GAACCACCTAGCAACACAGCAAACA 680 345 580 Antisense
CAGCAAACACCATCATGTCCGAGTC 249 205 596 Antisense
TGTCCGAGTCCTTGGCATCAATTAA 627 555 611 Antisense
GATAAAACCCTCTCTACAAGTTCAA 135 421 727 Antisense
AAGCCAGGATGATGCGACCGACGCT 398 149 753 Antisense
GACCGACGCTCCGAATCAAATCATT 641 381 768 Antisense
TCATGTTTTCAAAGGCCGATCTCTG 538 621 813 Antisense
Sequence Source Affymetrix Proprietary Database