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[182056_at]

Description F55A3.2 /REP_DB=WormBase Gene ID /WP=CE17112 /TR=Q9N5R8 /GB=AAF39834.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 58      6grp_total > 57      4grp_total > 15      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 187.1
(2.5)
P 		14.4
(-3)
A 		44.1
(-2.1)
A 		202.2
(3)
P 		188
B 146
(3)
P 		74.3
(-2.9)
A 		108
(-0.1)
A 		72.6
(-3)
A 		73
C 137.5
(3)
P 		22.7
(-3)
A 		36
(-2.3)
A 		124.6
(2.3)
P 		115
avr 156.9
(3) 		37.1
(-3) 		62.7
(-1.7) 		133.1
(1.8) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 154.3
(-0.6)
A 		103.2
(-3)
M 		137.2
(-1.4)
P 		104.1
(-3)
P 		120.1
(-2.2)
A 		230.4
(3)
P 		127
B 173.2
(1)
P 		196.6
(3)
P 		133.2
(-2.3)
P 		128.4
(-2.7)
P 		124.8
(-3)
P 		177.5
(1.4)
P 		72
C 141.4
(-0.2)
A 		174
(1.5)
P 		87.7
(-3)
A 		146
(0.1)
P 		135
(-0.5)
A 		202
(3)
P 		114
avr 156.3
(-0.4) 		157.9
(-0.2) 		119.4
(-3) 		126.2
(-2.5) 		126.6
(-2.5) 		203.3
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 68.1
(3)
P 		3.1
(-3)
A 		11.5
(-2.2)
A 		29.6
(-0.6)
P 		65
B 46.6
(3)
P 		18.4
(-2.4)
A 		25
(-1.2)
A 		15.5
(-3)
A 		31
C 45.5
(3)
P 		6.5
(-3)
A 		12.6
(-2.1)
A 		21
(-0.8)
P 		39
avr 53.4
(3) 		9.3
(-3) 		16.4
(-2) 		22
(-1.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 28.4
(-2.6)
A 		36.7
(-0.9)
M 		29.9
(-2.3)
P 		26.4
(-3)
P 		36.2
(-1)
A 		56.1
(3)
P 		30
B 60.3
(2)
P 		65.4
(2.9)
P 		32.3
(-3)
P 		34
(-2.7)
P 		50.7
(0.3)
P 		66.2
(3)
P 		34
C 52.4
(1)
A 		53.1
(1.1)
P 		22.3
(-3)
A 		29.4
(-2.1)
P 		43.7
(-0.2)
A 		67.6
(3)
P 		45
avr 47
(0.2) 		51.7
(1) 		28.2
(-3) 		29.9
(-2.7) 		43.5
(-0.4) 		63.3
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.915
Sequence Type Exemplar sequence
Representative Public ID F55A3.2 NCBI
Target Description F55A3.2 /REP_DB=WormBase Gene ID /WP=CE17112 /TR=Q9N5R8 /GB=AAF39834.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060421 NCBI Caenorhabditis elegans F55A3.2 (F55A3.2) mRNA, complete cds. 11/11 None
SNAP00000019263 ENSEMBL cdna:SNAP chromosome:CEL140:I:10801713:10806021:1 11/11 None
GENEFINDER00000019266 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10801713:10806021:1 10/11 None
F55A3.2 ENSEMBL cdna:known chromosome:CEL140:I:10801522:10806162:1 gene:F55A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10801643-10805952(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A3.2
Entrez Gene 172985 Entrez gene
SwissProt Q9N5R8 EMBL-EBI
WormBase CE17112 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39834 Hypothetical protein F55A3.2 [Caenorhabditis elegans] ref|NP_492822.1| F55A3.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182056_AT
gagcatatttcttcgatcttgtggtattgattggctatgtaagagcaataatatatgctc
ggcagcctggtcgctagtgtttcgagattccaataaaacatctcatcaacagtatgcgat
cacttatttcaaattgttacgagaaaaagaacgaagtcagattcaatttcttgatggtgg
tcttgctggacatccgacttatcgcaaaatttcgtctgtagtaatttcaaagaaacgaaa
gaaccatatagtaccgcatgaaaagattcgaaaaaaacagaaaagatatagaacaccgga
acgtataggaataccgaacaggcccagaggtggagatcataaatctttggattttaagag
aagaaccgggagatatgttgagcctgaaagcccagaagattcagatgagactgataaggt
tcaagaatctgtgatttgtcatgtaaaggaagatcctatcgattccacgtattttgatag
ttgtgaatgtatcccaactcctctggaaatgacgtcacactcgtcttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATATTTCTTCGATCTTGTGGT 275 389 1785 Antisense
TAATATATGCTCGGCAGCCTGGTCG 213 635 1833 Antisense
AGCCTGGTCGCTAGTGTTTCGAGAT 701 81 1848 Antisense
AACATCTCATCAACAGTATGCGATC 120 137 1881 Antisense
TTTCTTGATGGTGGTCTTGCTGGAC 696 669 1951 Antisense
CTTGCTGGACATCCGACTTATCGCA 159 219 1966 Antisense
GGAATACCGAACAGGCCCAGAGGTG 468 533 2092 Antisense
GAGATATGTTGAGCCTGAAAGCCCA 531 395 2154 Antisense
GAAGATCCTATCGATTCCACGTATT 149 339 2233 Antisense
AATGTATCCCAACTCCTCTGGAAAT 235 163 2270 Antisense
AAATGACGTCACACTCGTCTTCTCA 185 117 2291 Antisense
Sequence Source Affymetrix Proprietary Database