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[182055_at]

Description Y37H9A.1 /REP_DB=WormBase Gene ID /WP=CE20227 /TR=Q9U2M9 /GB=CAB63349.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 99.5
(2.4)
A 		26.8
(-2.9)
A 		25.2
(-3)
A 		107.7
(3)
A 		83
B 96.8
(3)
A 		66.4
(-3)
A 		89.1
(1.5)
A 		71
(-2.1)
A 		30
C 38.1
(-3)
A 		91
(0.8)
A 		121.2
(3)
A 		68.6
(-0.8)
A 		83
avr 78.1
(1.8) 		61.4
(-3) 		78.5
(1.9) 		82.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 50.9
(-2.2)
A 		45.3
(-3)
A 		70.3
(0.6)
A 		50.1
(-2.3)
A 		86.9
(3)
A 		85.5
(2.8)
A 		42
B 104.4
(0.9)
A 		53.6
(-3)
A 		80.2
(-1)
A 		102
(0.7)
M 		132.6
(3)
A 		106.7
(1)
A 		79
C 80.3
(0.5)
A 		62.3
(-0.8)
A 		85.5
(0.8)
A 		32
(-3)
A 		91.2
(1.2)
A 		115.8
(3)
P 		84
avr 78.5
(-0) 		53.7
(-3) 		78.7
(0) 		61.4
(-2.1) 		103.6
(3) 		102.7
(2.9) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 36.2
(3)
A 		5.8
(-3)
A 		6.6
(-2.8)
A 		15.8
(-1)
A 		30
B 30.9
(3)
A 		16.4
(-2.5)
A 		20.6
(-0.9)
A 		15.1
(-3)
A 		16
C 12.6
(-2.8)
A 		26.2
(-0.1)
A 		42.2
(3)
A 		11.6
(-3)
A 		31
avr 26.6
(3) 		16.1
(-2.1) 		23.1
(1.3) 		14.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 9.4
(-3)
A 		16.1
(-0.6)
A 		15.3
(-0.9)
A 		12.7
(-1.8)
A 		26.2
(3)
A 		20.8
(1.1)
A 		17
B 36.3
(0.1)
A 		17.9
(-3)
A 		19.5
(-2.7)
A 		27
(-1.5)
M 		53.9
(3)
A 		39.8
(0.7)
A 		36
C 29.8
(1.3)
A 		19
(-0.7)
A 		21.8
(-0.1)
A 		6.4
(-3)
A 		29.5
(1.3)
A 		38.8
(3)
P 		32
avr 25.2
(-0.2) 		17.7
(-2.3) 		18.9
(-2) 		15.4
(-3) 		36.5
(3) 		33.1
(2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2040
Sequence Type Exemplar sequence
Representative Public ID Y37H9A.1 NCBI
Target Description Y37H9A.1 /REP_DB=WormBase Gene ID /WP=CE20227 /TR=Q9U2M9 /GB=CAB63349.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026582(10), NM_001026581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026582 NCBI Caenorhabditis elegans Y37H9A.1b (Y37H9A.1) mRNA, complete cds. 10/11 None
NM_001026581 NCBI Caenorhabditis elegans Y37H9A.1a (Y37H9A.1) mRNA, complete cds. 11/11 None
SNAP00000010047 ENSEMBL cdna:SNAP chromosome:CEL140:I:13779235:13787127:1 10/11 None
GENEFINDER00000010052 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13779238:13786795:1 10/11 None
Y37H9A.1a ENSEMBL cdna:known chromosome:CEL140:I:13781185:13786840:1 gene:Y37H9A.1 11/11 None
Y37H9A.1b ENSEMBL cdna:known chromosome:CEL140:I:13781189:13786855:1 gene:Y37H9A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13781119-13786726(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y37H9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60795 Hypothetical protein Y37H9A.1b [Caenorhabditis elegans] ref|NP_001021753.1| Y37H9A.1b [Caenorhabditis elegans] 0.0
blast CAB63349 Hypothetical protein Y37H9A.1a [Caenorhabditis elegans] ref|NP_001021752.1| Y37H9A.1a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010052 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:182055_AT
cagattctccatgctgaagctctttttgccgattttcgtgcggaacagcctagtgattgg
ccgaaaattgagtcagaacacccgagatttgaagttttaaagcgaaaaattgaagaagaa
cggagatacgaggagacgcagagaagatatcccgatcgcccacgacaaccgcttccaccg
aaaattcaacgtgtagaatcctctgaatctctgtcacttctcgccaacaccattttctca
aaatatcgatcgattgatgacgtcatcggcgtgccacgtgtcggagagctcaagctcaat
tgtttgaaagccattgcgaatttggcgaatttatcggattctaataagcttgccacgctg
caaaatggccgacaaggactaatttcagtgcttcaatgtaccacgagacggcctgaatat
ttcttggagagctttactatgagaaatcaatcgatattctgtgttcgtcagctaacagat
ggttgtcaagagaataaggaagtggtttttaatctccagcagccaaatcaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATTCTCCATGCTGAAGCTCTTT 181 207 970 Antisense
CTGAAGCTCTTTTTGCCGATTTTCG 310 237 983 Antisense
GATTTTCGTGCGGAACAGCCTAGTG 220 427 1000 Antisense
ATTGAGTCAGAACACCCGAGATTTG 8 5 1036 Antisense
CGCAGAGAAGATATCCCGATCGCCC 170 255 1106 Antisense
CCGCTTCCACCGAAAATTCAACGTG 67 261 1138 Antisense
TAGAATCCTCTGAATCTCTGTCACT 88 653 1163 Antisense
GCTTGCCACGCTGCAAAATGGCCGA 643 305 1317 Antisense
CAATGTACCACGAGACGGCCTGAAT 11 183 1363 Antisense
ATCGATATTCTGTGTTCGTCAGCTA 231 35 1419 Antisense
TAATCTCCAGCAGCCAAATCAACCA 475 635 1479 Antisense
Sequence Source Affymetrix Proprietary Database