[Home] | [Total List]

[182054_at] 7TM chemoreceptor, srx family

Description K03B4.5 /REP_DB=WormBase Gene ID /WP=CE07325 /TR=Q21170 /GB=AAA97993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 27      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 25.5
(-0.7)
A 		38.2
(0.7)
A 		5.1
(-3)
A 		59.3
(3)
A 		54
B 25.3
(-2.2)
A 		49.8
(3)
P 		25.8
(-2.1)
A 		21.7
(-3)
A 		28
C 19.7
(-2.1)
A 		49.7
(0.5)
P 		8.9
(-3)
A 		79.3
(3)
P 		70
avr 23.5
(-1.5) 		45.9
(1.9) 		13.3
(-3) 		53.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 2.8
(-3)
A 		5.6
(-2.6)
A 		14.6
(-1.1)
A 		2.8
(-3)
A 		20.7
(-0.2)
A 		40.8
(3)
A 		38
B 30.2
(0.5)
A 		12.9
(-2.6)
A 		20.8
(-1.2)
A 		13.9
(-2.4)
A 		10.4
(-3)
A 		44.2
(3)
A 		34
C 32.2
(-0.4)
A 		72.3
(3)
P 		3.5
(-2.8)
A 		1.4
(-3)
A 		34.4
(-0.2)
A 		15.3
(-1.8)
A 		71
avr 21.7
(0.4) 		30.3
(2.3) 		13
(-1.5) 		6
(-3) 		21.8
(0.5) 		33.4
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.3
(3)
A 		8.3
(2.3)
A 		1.3
(-3)
A 		8.7
(2.6)
A 		8
B 8.1
(-0.3)
A 		12.3
(3)
P 		6
(-1.9)
A 		4.6
(-3)
A 		8
C 6.5
(-1.2)
A 		14.3
(3)
P 		3.1
(-3)
A 		13.4
(2.5)
P 		11
avr 8
(0.3) 		11.6
(3) 		3.5
(-3) 		8.9
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2
(-2)
A 		3.2
(-1.3)
A 		0.7
(-2.9)
A 		6.2
(0.6)
A 		9.9
(3)
A 		9
B 10.5
(0.2)
A 		4.3
(-2.7)
A 		5
(-2.4)
A 		3.7
(-3)
A 		4.2
(-2.8)
A 		16.5
(3)
A 		13
C 11.9
(0.2)
A 		22.1
(3)
P 		0.9
(-2.8)
A 		0.3
(-3)
A 		11.1
(-0)
A 		5.1
(-1.7)
A 		22
avr 7.6
(1) 		9.5
(2.3) 		3
(-2.1) 		1.6
(-3) 		7.2
(0.8) 		10.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15183
Sequence Type Exemplar sequence
Representative Public ID K03B4.5 NCBI
Target Description K03B4.5 /REP_DB=WormBase Gene ID /WP=CE07325 /TR=Q21170 /GB=AAA97993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071856 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-77) (srx-77) mRNA, complete cds. 11/11 None
GENEFINDER00000000721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4666559:4668550:-1 11/11 None
K03B4.5 ENSEMBL cdna:known chromosome:CEL140:V:4666559:4668550:-1 gene:K03B4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000708 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4667260-4668950(-) 82.59 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-77
Ensembl K03B4.5
Entrez Gene 186920 Entrez gene
SwissProt Q21170 EMBL-EBI
WormBase CE36548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97993 Serpentine receptor, class x protein 77 [Caenorhabditis elegans] ref|NP_504257.3| Serpentine Receptor, class X family member (srx-77) [Caenorhabditis elegans] 1.0E-169
blast CAE64164 Hypothetical protein CBG08785 [Caenorhabditis briggsae] 1.0E-110
blast CAB02705 Hypothetical protein C01G10.3 [Caenorhabditis elegans] ref|NP_506720.2| Serpentine Receptor, class X family member (srx-78) [Caenorhabditis elegans] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.4E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504257.3 7 20-42,63-85,118-140,161-178,182-204,225-247,262-284
K03B4.5 7 20-42,63-85,118-140,161-178,182-204,225-247,262-284
GENEFINDER00000000721 7 20-42,63-85,118-140,161-178,182-204,225-247,262-284
Sequence
Target Sequence 
>C. ELEGANS:182054_AT
gaaacagttctcttgactacagccatgaatctaaaagtgtacaatgaatttcaaagtatc
tatctctcgatcaatcgcctcgtagccatatattttccactcaaatataattttctgttt
ggtatcaagcttacactggcatttcatttcatatactacctggatcgtgttagaaatgtt
acctttgaaaatatagaccgatacaaagactcaaagtttatgcttttctctgtgaaacac
ctggcttacggtggcgtcttcgtgactccagatggtattttctactggtctctcggtctc
cttatcttcccattttttgtaaacatattcacatttgcaagactttactatttaaagaga
aaaacaaaccagaatgctgcaaatttcaaagacatcaaaaagaatatggcattgttcttt
caaattatttttcaagattccttattctttatcagtgttgcctttaccatgaaaatgaat
atgctcatcgaccatcgtttctactcattcttcagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAGTTCTCTTGACTACAGCCA 485 355 460 Antisense
AGTATCTATCTCTCGATCAATCGCC 195 63 514 Antisense
GCCTCGTAGCCATATATTTTCCACT 167 281 536 Antisense
GGTATCAAGCTTACACTGGCATTTC 622 505 580 Antisense
TGGCATTTCATTTCATATACTACCT 686 545 596 Antisense
AACACCTGGCTTACGGTGGCGTCTT 492 135 695 Antisense
CGTCTTCGTGACTCCAGATGGTATT 392 245 714 Antisense
GATGGTATTTTCTACTGGTCTCTCG 52 409 730 Antisense
CTTTATCAGTGTTGCCTTTACCATG 709 221 906 Antisense
TATGCTCATCGACCATCGTTTCTAC 563 657 939 Antisense
TCGTTTCTACTCATTCTTCAGTCAA 111 605 954 Antisense
Sequence Source Affymetrix Proprietary Database