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[182053_at]

Description B0205.5 /REP_DB=WormBase Gene ID /WP=CE17319 /TR=O61740 /GB=AAC16987.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 38.8
(2.8)
A 		35
(2.1)
A 		8
(-3)
A 		40
(3)
A 		32
B 11.9
(-2)
A 		49.6
(3)
P 		19.4
(-1)
A 		4.2
(-3)
A 		45
C 34.1
(1.3)
A 		14.5
(-3)
A 		29.2
(0.3)
A 		41.6
(3)
A 		27
avr 28.3
(1) 		33
(3) 		18.9
(-3) 		28.6
(1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.6
(-2.3)
A 		4.7
(-3)
A 		7
(-2.1)
A 		13.6
(0.5)
A 		7.2
(-2)
A 		20.1
(3)
A 		15
B 6.8
(-2.3)
A 		22.7
(0.2)
A 		6.5
(-2.3)
A 		40.7
(3)
A 		5
(-2.6)
A 		2.3
(-3)
A 		38
C 27.4
(1.8)
P 		14.4
(-0.8)
A 		33.1
(3)
A 		11.9
(-1.3)
A 		3.8
(-3)
A 		17.1
(-0.3)
A 		29
avr 13.6
(-0) 		13.9
(0.1) 		15.5
(0.6) 		22.1
(3) 		5.3
(-3) 		13.2
(-0.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.1
(3)
A 		7.6
(-0.3)
A 		2.1
(-3)
A 		5.8
(-1.2)
A 		12
B 3.8
(-1.5)
A 		12.2
(3)
P 		4.5
(-1.1)
A 		0.9
(-3)
A 		11
C 11.3
(3)
A 		4.2
(-3)
A 		10.2
(2.1)
A 		7
(-0.6)
A 		7
avr 9.7
(3) 		8
(1) 		5.6
(-1.8) 		4.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.7
(-2.2)
A 		1.5
(-2.5)
A 		3.4
(0.6)
A 		2.2
(-1.4)
A 		4.9
(3)
A 		4
B 2.4
(-2.1)
A 		7.6
(1.1)
A 		1.6
(-2.6)
A 		10.8
(3)
A 		2
(-2.3)
A 		0.9
(-3)
A 		10
C 10.1
(3)
P 		4.4
(-0.8)
A 		8.4
(1.9)
A 		2.4
(-2.2)
A 		1.2
(-3)
A 		5.7
(0)
A 		9
avr 4.6
(1.5) 		4.6
(1.5) 		3.8
(0.2) 		5.5
(3) 		1.8
(-3) 		3.8
(0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2048
Sequence Type Exemplar sequence
Representative Public ID B0205.5 NCBI
Target Description B0205.5 /REP_DB=WormBase Gene ID /WP=CE17319 /TR=O61740 /GB=AAC16987.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060412 NCBI Caenorhabditis elegans B0205.5 (B0205.5) mRNA, complete cds. 11/11 None
GENEFINDER00000024679 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10744825:10748516:1 10/11 None
SNAP00000024672 ENSEMBL cdna:SNAP chromosome:CEL140:I:10748136:10748516:1 11/11 None
B0205.5 ENSEMBL cdna:known chromosome:CEL140:I:10748136:10748711:1 gene:B0205.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10748066-10748642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.5
Entrez Gene 181832 Entrez gene
SwissProt O61740 EMBL-EBI
WormBase CE17319 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16992 Hypothetical protein B0205.6 [Caenorhabditis elegans] ref|NP_492812.2| B0205.6 [Caenorhabditis elegans] 0.0
blast CAE67358 Hypothetical protein CBG12821 [Caenorhabditis briggsae] 0.0
blast AAF53143 CG12264-PA [Drosophila melanogaster] gb|AAM29368.1| LD22661p [Drosophila melanogaster] ref|NP_609533.1| CG12264-PA [Drosophila melanogaster] sp|Q9VKD3|NFS1_DROME Probable cysteine desulfurase, mitochondrial precursor 1.0E-170
blast AAC16987 Hypothetical protein B0205.5 [Caenorhabditis elegans] ref|NP_492813.1| B0205.5 [Caenorhabditis elegans] 2.0E-49
blast AAC16987 Hypothetical protein B0205.5 [Caenorhabditis elegans] ref|NP_492813.1| B0205.5 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 4.0
Pfam IPR000192 EMBL-EBI Aminotransferase, class V 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182053_AT
agacagccatttttggctcaccaccaaaccattgagggccatctttgtgcaatcctcttt
tcaacagaagcacgtgctgacgggaaaacgttgagcaatgaagacctcgagaacaaaatt
cgagctgccgaatcaattaaaaaggctatgctgaacgaacgtatgattgagcacgttaag
tccaagctcaccaagcgtggtgttaaggtgtgggacaaactcgcttcaagagtctcattt
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAGCCATTTTTGGCTCACCACC 638 71 25 Antisense
CACCACCAAACCATTGAGGGCCATC 574 197 43 Antisense
GAGGGCCATCTTTGTGCAATCCTCT 19 403 58 Antisense
GCAATCCTCTTTTCAACAGAAGCAC 85 323 73 Antisense
AGAAGCACGTGCTGACGGGAAAACG 511 73 90 Antisense
AAAGGCTATGCTGAACGAACGTATG 684 119 165 Antisense
ATGATTGAGCACGTTAAGTCCAAGC 159 47 187 Antisense
TAAGTCCAAGCTCACCAAGCGTGGT 360 637 201 Antisense
CAAGCGTGGTGTTAAGGTGTGGGAC 111 181 216 Antisense
AAGGTGTGGGACAAACTCGCTTCAA 149 159 229 Antisense
AACTCGCTTCAAGAGTCTCATTTTT 658 141 242 Antisense
Sequence Source Affymetrix Proprietary Database