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[182052_at]

Description F13B9.6 /REP_DB=WormBase Gene ID /WP=CE27423 /TR=Q19379 /GB=AAK39227.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      6grp_total > 24      4grp_total > 51      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 58.8
(-2.2)
P 		120.8
(3)
P 		83.1
(-0.2)
P 		49.4
(-3)
A 		71
B 73.3
(-0)
P 		120.3
(3)
P 		96.5
(1.5)
P 		27.3
(-3)
A 		93
C 90.7
(0.8)
P 		104.4
(3)
P 		67.3
(-3)
P 		73.2
(-2)
A 		37
avr 74.3
(-0.8) 		115.2
(3) 		82.3
(-0) 		50
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 94.7
(3)
P 		79.2
(1.7)
P 		93.8
(2.9)
P 		32.7
(-2.2)
P 		50
(-0.8)
A 		23.8
(-3)
A 		71
B 105.7
(3)
P 		59.3
(-0.7)
P 		57.4
(-0.9)
A 		62.5
(-0.5)
A 		60.2
(-0.6)
P 		30.9
(-3)
A 		75
C 116.7
(3)
P 		100
(1.9)
P 		79.8
(0.6)
P 		41.4
(-2)
P 		25.9
(-3)
M 		43.7
(-1.8)
P 		91
avr 105.7
(3) 		79.5
(0.8) 		77
(0.6) 		45.5
(-2) 		45.4
(-2) 		32.8
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.4
(1.5)
P 		26.2
(3)
P 		21.7
(1.6)
P 		7.2
(-3)
A 		19
B 23.4
(1.4)
P 		29.7
(3)
P 		22.4
(1.2)
P 		5.8
(-3)
A 		24
C 30
(3)
P 		30
(3)
P 		23.4
(0.8)
P 		12.3
(-3)
A 		18
avr 24.9
(1.9) 		28.6
(3) 		22.5
(1.2) 		8.4
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 17.5
(0.1)
P 		28.2
(3)
P 		20.4
(0.9)
P 		8.3
(-2.3)
P 		15.1
(-0.5)
A 		5.8
(-3)
A 		22
B 36.8
(3)
P 		19.7
(-1.1)
P 		13.9
(-2.4)
A 		16.6
(-1.8)
A 		24.4
(0.1)
P 		11.5
(-3)
A 		25
C 43.3
(3)
P 		30.5
(0.8)
P 		20.3
(-0.9)
P 		8.3
(-3)
P 		8.4
(-3)
M 		14.6
(-1.9)
P 		35
avr 32.5
(3) 		26.1
(1.2) 		18.2
(-0.9) 		11.1
(-2.9) 		16
(-1.5) 		10.6
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16990
Sequence Type Exemplar sequence
Representative Public ID F13B9.6 NCBI
Target Description F13B9.6 /REP_DB=WormBase Gene ID /WP=CE27423 /TR=Q19379 /GB=AAK39227.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076994(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076994 NCBI Caenorhabditis elegans F13B9.6 (F13B9.6) mRNA, complete cds. 9/11 A 
F13B9.6 ENSEMBL cdna:known chromosome:CEL140:X:8262378:8270959:-1 gene:F13B9.6 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8269466-8272166(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B9.6
Entrez Gene 181081 Entrez gene
SwissProt Q19379 EMBL-EBI
WormBase CE37101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39227 Hypothetical protein F13B9.6 [Caenorhabditis elegans] ref|NP_509395.2| F13B9.6 [Caenorhabditis elegans] 0.0
blast CAE74867 Hypothetical protein CBG22726 [Caenorhabditis briggsae] 1.0E-110
blast CAE74866 Hypothetical protein CBG22725 [Caenorhabditis briggsae] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 9.4E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509395.2 1 343-365
F13B9.6 1 343-365
Sequence
Target Sequence 
>C. ELEGANS:182052_AT
gcgggaggttgcttacaggctgagatcagaatcccaaataataaggaaaacgcaacatca
agtaggagtccctaggtaccaaagagatcagaatatgtttattttttggatgttattatg
gcttatcgacaccgcccaaggagaagctttgatcacagacaagaaagtaacatgtacatc
ttcgaatatcgaagttgcactcacttttgccaaaagtttttctggaggcgttttgaccga
aaacccaagaaaatatgaacaatgcaggtggaaaggtaacggatctaattcgatgtcaat
caacataccactgtttaactccacaaagtgcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGGAGGTTGCTTACAGGCTGAGA 282 291 15 Antisense
AACGCAACATCAAGTAGGAGTCCCT 269 145 63 Antisense
GGAGTCCCTAGGTACCAAAGAGATC 217 511 79 Antisense
TATTATGGCTTATCGACACCGCCCA 267 663 128 Antisense
TTATCGACACCGCCCAAGGAGAAGC 693 677 137 Antisense
GGAGAAGCTTTGATCACAGACAAGA 441 519 154 Antisense
GTAACATGTACATCTTCGAATATCG 676 461 181 Antisense
TCGAAGTTGCACTCACTTTTGCCAA 275 601 203 Antisense
GGTAACGGATCTAATTCGATGTCAA 602 503 289 Antisense
GATGTCAATCAACATACCACTGTTT 203 399 306 Antisense
ACTGTTTAACTCCACAAAGTGCGCC 346 95 324 Antisense
Sequence Source Affymetrix Proprietary Database