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[182051_s_at]

Description C41H7.7 /REP_DB=WormBase Gene ID /WP=CE08678 /TR=O17155 /GB=AAB70938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 47      6grp_cgc > 36      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 226.6
(3)
P 		43.7
(-2.7)
A 		61.9
(-2.1)
A 		32.4
(-3)
A 		194
B 210.7
(3)
P 		35.9
(-2.4)
A 		16.4
(-3)
A 		34.7
(-2.4)
A 		194
C 252.6
(3)
P 		51.3
(-2.3)
A 		26.1
(-3)
A 		35.6
(-2.7)
A 		227
avr 230
(3) 		43.6
(-2.7) 		34.8
(-3) 		34.2
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.6
(-2.6)
A 		9.2
(-2.1)
A 		4.1
(-3)
A 		26.3
(0.7)
A 		5.1
(-2.8)
A 		40
(3)
A 		36
B 26.7
(2.2)
A 		5.2
(-2.9)
A 		29.9
(3)
A 		8.5
(-2.1)
A 		20.9
(0.8)
A 		4.9
(-3)
A 		25
C 9.6
(0.3)
A 		15.3
(3)
A 		8.9
(-0)
A 		11.8
(1.3)
A 		5.3
(-1.8)
A 		2.7
(-3)
A 		13
avr 14.3
(1.4) 		9.9
(-3) 		14.3
(1.4) 		15.5
(2.6) 		10.4
(-2.5) 		15.9
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 82.5
(3)
P 		9.5
(-2.6)
A 		16.2
(-2.1)
A 		4.7
(-3)
A 		78
B 67.2
(3)
P 		8.9
(-2.5)
A 		3.8
(-3)
A 		7.4
(-2.7)
A 		63
C 83.6
(3)
P 		14.7
(-2.3)
A 		9.1
(-2.8)
A 		6
(-3)
A 		78
avr 77.8
(3) 		11
(-2.6) 		9.7
(-2.7) 		6
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		3.3
(-1.4)
A 		0.9
(-3)
A 		6.7
(1)
A 		1.5
(-2.6)
A 		9.7
(3)
A 		9
B 9.3
(3)
A 		1.7
(-3)
A 		7.3
(1.4)
A 		2.3
(-2.5)
A 		8.5
(2.4)
A 		1.8
(-2.9)
A 		8
C 3.5
(1.1)
A 		4.7
(3)
A 		2.3
(-0.8)
A 		2.4
(-0.6)
A 		1.7
(-1.7)
A 		0.9
(-3)
A 		4
avr 4.7
(3) 		3.2
(-3) 		3.5
(-1.8) 		3.8
(-0.6) 		3.9
(-0.2) 		4.1
(0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182051_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4327
Sequence Type Exemplar sequence
Representative Public ID C41H7.7 NCBI
Target Description C41H7.7 /REP_DB=WormBase Gene ID /WP=CE08678 /TR=O17155 /GB=AAB70938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062025(11), NM_062026(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062025 NCBI Caenorhabditis elegans C-type LECtin family member (clec-3) (clec-3) mRNA, complete cds. 11/11 A 
NM_062026 NCBI Caenorhabditis elegans C-type LECtin family member (clec-2) (clec-2) mRNA, complete cds. 11/11 A 
SNAP00000034446 ENSEMBL cdna:SNAP chromosome:CEL140:II:3017783:3023426:-1 11/11 None
GENEFINDER00000034461 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3020580:3023426:-1 11/11 None
C41H7.7 ENSEMBL cdna:known chromosome:CEL140:II:3017521:3019782:-1 gene:C41H7.7 11/11 A 
B0454.7 ENSEMBL cdna:known chromosome:CEL140:II:3020580:3023426:-1 gene:B0454.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034467 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3017519-3019781(-) 92.97 100.0
Public Domain and Genome References
Gene Title

Gene Symbol clec-2
clec-3
Ensembl C41H7.7
B0454.7
Entrez Gene 181993 Entrez gene
183396 Entrez gene
SwissProt O17166 EMBL-EBI
O17155 EMBL-EBI
WormBase CE07757 Wormbase
CE32606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70938 C-type lectin protein 3 [Caenorhabditis elegans] ref|NP_494426.2| C-type LECtin family member (clec-3) [Caenorhabditis elegans] 0.0
blast AAB70944 C-type lectin protein 2 [Caenorhabditis elegans] ref|NP_494427.1| C-type LECtin family member (clec-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 3.9E-6
Pfam IPR000859 EMBL-EBI CUB 9.1E-23
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 8.2E-9
Pfam IPR000859 EMBL-EBI CUB 8.6E-22
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 3.9E-6
Pfam IPR000859 EMBL-EBI CUB 3.0E-19
Pfam IPR000859 EMBL-EBI CUB 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:182051_S_AT
aacgttcttattggaggcatgtggcctatggatcacatgaacacctgggtggatggaact
atgtgggactacagtaatatcgactcagtttataatccgaagaatcggtgtattgccatg
gcgaataatggaacatcggaatataatttgggacaatggttcggtgttgattgcgaaggt
ctgtccagcttcttctgtaagcggcctgccggggtgccatgctccacagaccagccgaag
gtcacagtgacacctgtcccatcaaatgagtcattctgcaactctactgtcctgatgacc
cccggaattataacatcaccaaattacccacaaaactatgacaataacgtgtactgcagc
tacaagctctccaccttgggatcctacaacatcctccttgaatttacatccttctcaaca
gaggagaatgtcgatctggttacggtatacgacggggaatcaacaaatgggctgaaaatt
ggaacttatagtggatctcgtgagccattccacttgatttcaaaaggaaataacttcttc
gtcacgttcgcaacagattcgaggaatgtcttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTCTTATTGGAGGCATGTGGC 58 145 823 Antisense
TGTGGGACTACAGTAATATCGACTC 625 553 884 Antisense
ACAGACCAGCCGAAGGTCACAGTGA 540 107 1048 Antisense
GAAGGTCACAGTGACACCTGTCCCA 695 333 1059 Antisense
CAGTGACACCTGTCCCATCAAATGA 18 209 1067 Antisense
ACACCTGTCCCATCAAATGAGTCAT 694 109 1072 Antisense
TCACCAAATTACCCACAAAACTATG 141 623 1138 Antisense
ATGACAATAACGTGTACTGCAGCTA 632 41 1160 Antisense
TGTACTGCAGCTACAAGCTCTCCAC 86 561 1172 Antisense
ACATCCTTCTCAACAGAGGAGAATG 99 107 1228 Antisense
AACAGATTCGAGGAATGTCTTCAAA 326 135 1374 Antisense
Sequence Source Affymetrix Proprietary Database