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[182050_at]

Description C41H7.7 /REP_DB=WormBase Gene ID /WP=CE08678 /TR=O17155 /GB=AAB70938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 47      6grp_cgc > 0      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 238.4
(3)
P 		66.5
(-1.6)
M 		35.1
(-2.5)
A 		14.9
(-3)
A 		224
B 217
(3)
P 		48.1
(-1.7)
A 		19.8
(-2.5)
A 		3.5
(-3)
A 		214
C 255
(3)
P 		15.4
(-3)
A 		28.7
(-2.7)
A 		43
(-2.3)
A 		240
avr 236.8
(3) 		43.3
(-2.4) 		27.9
(-2.8) 		20.5
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 27.6
(3)
A 		11.1
(-0.9)
A 		2.7
(-2.9)
A 		2.7
(-2.9)
A 		9.2
(-1.4)
A 		2.4
(-3)
A 		25
B 18.8
(-1.1)
A 		3.8
(-2.8)
A 		5.7
(-2.6)
A 		53.3
(3)
A 		2.2
(-3)
A 		11
(-2)
A 		51
C 14.4
(2.2)
A 		16.1
(3)
A 		11.6
(0.9)
A 		3.6
(-2.9)
A 		5.1
(-2.2)
A 		3.3
(-3)
A 		13
avr 20.3
(3) 		10.3
(-1.1) 		6.7
(-2.5) 		19.9
(2.8) 		5.5
(-3) 		5.6
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 86.8
(3)
P 		14.4
(-2.1)
M 		9.2
(-2.5)
A 		2.2
(-3)
A 		85
B 69.2
(3)
P 		11.9
(-2)
A 		4.6
(-2.7)
A 		0.8
(-3)
A 		68
C 84.4
(3)
P 		4.4
(-3)
A 		10
(-2.6)
A 		7.2
(-2.8)
A 		80
avr 80.1
(3) 		10.2
(-2.5) 		7.9
(-2.6) 		3.4
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.1
(3)
A 		3.9
(1.4)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		2.8
(-0.1)
A 		0.6
(-3)
A 		5
B 6.6
(-0.4)
A 		1.2
(-2.9)
A 		1.4
(-2.8)
A 		14.1
(3)
A 		0.9
(-3)
A 		4.1
(-1.5)
A 		13
C 5.3
(3)
A 		4.9
(2.5)
A 		2.9
(-0.1)
A 		0.7
(-3)
A 		1.6
(-1.8)
A 		1.1
(-2.5)
A 		5
avr 5.7
(3) 		3.3
(-0.5) 		1.6
(-3) 		5.2
(2.3) 		1.8
(-2.7) 		1.9
(-2.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4327
Sequence Type Exemplar sequence
Representative Public ID C41H7.7 NCBI
Target Description C41H7.7 /REP_DB=WormBase Gene ID /WP=CE08678 /TR=O17155 /GB=AAB70938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062025 NCBI Caenorhabditis elegans C-type LECtin family member (clec-3) (clec-3) mRNA, complete cds. 11/11 A 
C41H7.7 ENSEMBL cdna:known chromosome:CEL140:II:3017521:3019782:-1 gene:C41H7.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034446 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034467 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3017519-3019781(-) 92.97 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-3
Ensembl C41H7.7
Entrez Gene 183396 Entrez gene
SwissProt O17155 EMBL-EBI
WormBase CE32606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70938 C-type lectin protein 3 [Caenorhabditis elegans] ref|NP_494426.2| C-type LECtin family member (clec-3) [Caenorhabditis elegans] 0.0
blast AAB70944 C-type lectin protein 2 [Caenorhabditis elegans] ref|NP_494427.1| C-type LECtin family member (clec-2) [Caenorhabditis elegans] 0.0
blast CAB54396 Hypothetical protein Y38E10A.5 [Caenorhabditis elegans] ref|NP_496688.1| C-type LECtin family member (clec-4) [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 3.9E-6
Pfam IPR000859 EMBL-EBI CUB 9.1E-23
Sequence
Target Sequence 
>C. ELEGANS:182050_AT
agccatagagcttccgataacgttcttattggaggcatgtggcctatggatcacatgaac
acctgggtggatggaactatgtgggactacagtaatatcgactcagtttataatccgaag
aatcggtgtattgccatggcgaataatggaacatcggaatataatttgggacaatggttc
ggtgttgattgcgaaggtctgtccagcttcttctgtaagcggcctgccggggtgccatgc
tccacagaccagccgaaggtcacagtgacacctgtcccatcaaatgagtcattctgcaac
tctactgtcctgatgacccccggaattataacatcaccaaattacccacaaaactatgac
aataacgtgtactgcagctacaagctctccaccttgggatcctacaacatcctccttgaa
tttacatccttctcaacagaggagaatgtcgatctggttacggtatacgacggggaatca
acaaatgggctgaaaattggaacttatagtggatctcgtgagccattccacttgatttca
aaaggaaataacttcttcgtcacgttcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCATAGAGCTTCCGATAACGTTC 565 81 805 Antisense
GGCCTATGGATCACATGAACACCTG 564 543 845 Antisense
GAAGAATCGGTGTATTGCCATGGCG 296 339 921 Antisense
GTTGATTGCGAAGGTCTGTCCAGCT 132 439 988 Antisense
TGTCCAGCTTCTTCTGTAAGCGGCC 518 557 1004 Antisense
GAGTCATTCTGCAACTCTACTGTCC 77 401 1090 Antisense
CACCTTGGGATCCTACAACATCCTC 616 201 1194 Antisense
ACATCCTCCTTGAATTTACATCCTT 354 107 1211 Antisense
AATGTCGATCTGGTTACGGTATACG 279 163 1249 Antisense
CTCGTGAGCCATTCCACTTGATTTC 484 231 1319 Antisense
AAATAACTTCTTCGTCACGTTCGCA 129 115 1350 Antisense
Sequence Source Affymetrix Proprietary Database