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[182049_at]

Description C01F1.6 /REP_DB=WormBase Gene ID /WP=CE06747 /TR=Q17555 /GB=AAB00714.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 102.4
(0.4)
A 		106.1
(0.6)
A 		33.8
(-3)
A 		155
(3)
A 		121
B 142.4
(3)
A 		50.1
(-3)
A 		76.2
(-1.3)
A 		129.3
(2.1)
A 		92
C 76.8
(-0.7)
A 		109.7
(1.9)
A 		48.4
(-3)
A 		123.6
(3)
A 		75
avr 107.2
(0.9) 		88.6
(-0.4) 		52.8
(-3) 		136
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 84.5
(-0.7)
A 		59.7
(-1.8)
A 		32.8
(-3)
A 		58.7
(-1.8)
A 		166.4
(3)
A 		112.5
(0.6)
A 		134
B 123.8
(1.6)
A 		142.8
(3)
A 		97.2
(-0.3)
A 		59.9
(-3)
A 		91.1
(-0.7)
A 		116.9
(1.1)
A 		83
C 98.2
(2.6)
A 		48.6
(-1)
A 		104.5
(3)
A 		90.5
(2)
A 		78.4
(1.1)
A 		20.2
(-3)
A 		84
avr 102.2
(1.6) 		83.7
(-1) 		78.2
(-1.8) 		69.7
(-3) 		112
(3) 		83.2
(-1.1) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 37.3
(3)
A 		23
(-0)
A 		8.8
(-3)
A 		22.7
(-0.1)
A 		29
B 45.4
(3)
A 		12.4
(-3)
A 		17.7
(-2)
A 		27.6
(-0.2)
A 		33
C 25.4
(0.5)
A 		31.5
(3)
A 		16.9
(-3)
A 		20.8
(-1.4)
A 		15
avr 36
(3) 		22.3
(-0.8) 		14.5
(-3) 		23.7
(-0.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 15.6
(-1.8)
A 		21.2
(-1)
A 		7.1
(-3)
A 		14.9
(-1.9)
A 		50.2
(3)
A 		27.4
(-0.2)
A 		43
B 43.1
(2.2)
A 		47.5
(3)
A 		23.6
(-1.5)
A 		15.9
(-3)
A 		37
(1)
A 		43.6
(2.3)
A 		32
C 36.4
(3)
A 		14.8
(-1.4)
A 		26.6
(1)
A 		18.2
(-0.7)
A 		25.4
(0.8)
A 		6.7
(-3)
A 		30
avr 31.7
(1.4) 		27.8
(0.3) 		19.1
(-2.2) 		16.3
(-3) 		37.5
(3) 		25.9
(-0.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4261
Sequence Type Exemplar sequence
Representative Public ID C01F1.6 NCBI
Target Description C01F1.6 /REP_DB=WormBase Gene ID /WP=CE06747 /TR=Q17555 /GB=AAB00714.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062352
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028120 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4282583:4288162:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062352 7/11 Cross Hyb Matching Probes None
SNAP00000028114 7/11 Cross Hyb Matching Probes None
C01F1.6 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4282581-4285516(-) 97.4 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494753 C01F1.6 [Caenorhabditis elegans] 1.0E-178
blast AAB00714 Hypothetical protein C01F1.6 [Caenorhabditis elegans] 1.0E-177
blast CAE60117 Hypothetical protein CBG03659 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.014
Pfam IPR002110 EMBL-EBI Ankyrin 7.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.064
Sequence
Target Sequence 
>C. ELEGANS:182049_AT
gtgggcggagctcgagaacgctgattggctggtttttttttttttttttttttttttttt
aataaaaaatccacaaaaaaacgaaaaaaatcgtgatttttcactttttttgctaagttc
cctccaaaattcccagaccaatcagcgattcgctccgcccactttccaaccaatcagatg
cagtgggcggagttctaagacgctgattgagcctccaacaccgaaaatcgctacccccac
cggacgtcttccaacaacatgggaagaatattctggagctgctccaggagccccaccaca
aatgggtcgaccacaaattgtgaagacgaatgaaaaacagtttaaggctcttgttgggat
gagtgaagaattcccgttatcagttgatgtactcgttgatttattggaagttgttgctcc
gttcaaacatttggataagctgagaagattctgctcggcgagattaccgcccggattccc
tgtttgtgttgaaatcccacttctcgccacaatcgccgctaaagtcacattccaaaagtt
ccagttcacaaatgacattcaggacaaaatgttcacgatcccgacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGCGGAGCTCGAGAACGCTGAT 11 489 465 Antisense
CAAAATTCCCAGACCAATCAGCGAT 673 189 589 Antisense
CCACTTTCCAACCAATCAGATGCAG 241 275 623 Antisense
TAAGACGCTGATTGAGCCTCCAACA 709 637 660 Antisense
GCCTCCAACACCGAAAATCGCTACC 638 281 675 Antisense
CCGGACGTCTTCCAACAACATGGGA 413 263 704 Antisense
GAGCCCCACCACAAATGGGTCGACC 14 385 752 Antisense
TTCTGCTCGGCGAGATTACCGCCCG 73 693 913 Antisense
TTTGTGTTGAAATCCCACTTCTCGC 474 665 947 Antisense
CACAATCGCCGCTAAAGTCACATTC 218 195 972 Antisense
ACAAAATGTTCACGATCCCGACGTC 134 113 1028 Antisense
Sequence Source Affymetrix Proprietary Database