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[182048_at]

Description B0261.5 /REP_DB=WormBase Gene ID /WP=CE07707 /TR=O01439 /GB=AAB52352.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 33.9
(-3)
A 		35.2
(-2.9)
A 		52.5
(-2.1)
A 		160.2
(3)
A 		126
B 35.6
(3)
A 		26
(1.3)
A 		1.9
(-3)
A 		24.3
(1)
A 		34
C 32.4
(-1.4)
A 		40.3
(-0.9)
A 		6.6
(-3)
A 		101.1
(3)
A 		95
avr 34
(-1.9) 		33.8
(-1.9) 		20.3
(-3) 		95.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 57.9
(2)
A 		5.1
(-3)
A 		41.9
(0.5)
A 		24.7
(-1.2)
A 		48.4
(1.1)
A 		68.9
(3)
A 		64
B 60.2
(2.6)
A 		48.6
(0.1)
A 		35.7
(-2.8)
A 		34.6
(-3)
A 		40.9
(-1.6)
A 		62.1
(3)
A 		28
C 29.3
(-1.5)
A 		48
(1.2)
A 		25.8
(-2.1)
A 		56.3
(2.4)
A 		60.6
(3)
P 		19.3
(-3)
A 		41
avr 49.1
(2.6) 		33.9
(-3) 		34.5
(-2.8) 		38.5
(-1.3) 		50
(3) 		50.1
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.4
(-1.2)
A 		7.6
(-3)
A 		13.7
(-0.7)
A 		23.5
(3)
A 		16
B 11.3
(3)
A 		6.4
(0.3)
A 		0.4
(-3)
A 		5.2
(-0.4)
A 		11
C 10.7
(0.4)
A 		11.6
(0.8)
A 		2.3
(-3)
A 		17
(3)
A 		15
avr 11.5
(0.7) 		8.5
(-1.1) 		5.5
(-3) 		15.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.7
(0.6)
A 		1.8
(-3)
A 		9.1
(-0.1)
A 		6.3
(-1.2)
A 		14.6
(2.1)
A 		16.8
(3)
A 		15
B 20.9
(2)
A 		16.2
(0.1)
A 		8.7
(-3)
A 		9.2
(-2.8)
A 		16.6
(0.3)
A 		23.2
(3)
A 		15
C 10.8
(-1)
A 		14.6
(0.7)
A 		6.6
(-3)
A 		11.3
(-0.8)
A 		19.6
(3)
P 		6.5
(-3)
A 		13
avr 14.1
(1.1) 		10.9
(-1.1) 		8.1
(-3) 		8.9
(-2.5) 		16.9
(3) 		15.5
(2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.836
Sequence Type Exemplar sequence
Representative Public ID B0261.5 NCBI
Target Description B0261.5 /REP_DB=WormBase Gene ID /WP=CE07707 /TR=O01439 /GB=AAB52352.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059149 NCBI Caenorhabditis elegans B0261.5 (B0261.5) mRNA, complete cds. 11/11 None
B0261.5 ENSEMBL cdna:known chromosome:CEL140:I:5249790:5250440:-1 gene:B0261.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040716 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5249789-5250440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.5
Entrez Gene 181890 Entrez gene
SwissProt O01439 EMBL-EBI
WormBase CE07707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52352 Hypothetical protein B0261.5 [Caenorhabditis elegans] ref|NP_491550.1| B0261.5 [Caenorhabditis elegans] 7.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491550.1 1 4-26
B0261.5 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:182048_AT
atgctattattattccgttgtacaatcactgttgtccttccaattattttcctcatcttt
tttgtaattggatgtctaaaaaagaaaccatcacagagtaagaagaagccatcaaaagtg
tcaacagtcacttcaacgacgattagtcaagagaaaacaaattctaaaagaggatcaaaa
gatgctgttgtggatgtttcaaagcctggaaaacttccaactttaggagaaaataataag
aatttgagtgataagaaaagcaagcagagatcactgaaggcacagaaacaagatggactg
aaaatggagaagaaggcatcggataagcggaagaagaaggcgaataagaagagtcctcga
acacaggagacacaggaagttgtgataaaaaactcgaaaaatacagatgattcctgcatg
cacactgcaattcgagccaataccatgatgcatacagttcgtgaaccatcaaagattgct
tctaatgccaaacctaatgatggatcagacggagcggacggtggctacgaaaaactgggt
gacttgtcagctgatgatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTATTATTATTCCGTTGTACAA 49 43 13 Antisense
GTTGTACAATCACTGTTGTCCTTCC 397 437 29 Antisense
TGTTGTCCTTCCAATTATTTTCCTC 307 563 42 Antisense
TATTTTCCTCATCTTTTTTGTAATT 674 661 57 Antisense
GTGTCAACAGTCACTTCAACGACGA 291 485 130 Antisense
CAGATGATTCCTGCATGCACACTGC 180 207 416 Antisense
CACACTGCAATTCGAGCCAATACCA 357 195 433 Antisense
CATGATGCATACAGTTCGTGAACCA 591 205 456 Antisense
GATTGCTTCTAATGCCAAACCTAAT 646 433 486 Antisense
TCAGACGGAGCGGACGGTGGCTACG 327 623 517 Antisense
GGGTGACTTGTCAGCTGATGATCTC 4 499 549 Antisense
Sequence Source Affymetrix Proprietary Database