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[182046_at]

Description K07A1.10 /REP_DB=WormBase Gene ID /WP=CE11858 /TR=P90915 /GB=CAB03171.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 52      6grp_total > 42      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 803.6
(0.5)
P 		746.4
(-1)
P 		905.6
(3)
P 		663.8
(-3)
P 		242
B 591.4
(-2.1)
P 		989.1
(1.7)
P 		1120.8
(3)
P 		493.2
(-3)
P 		628
C 875.3
(1.9)
P 		948.9
(3)
P 		942
(2.9)
P 		555
(-3)
P 		394
avr 756.8
(-0.3) 		894.8
(1.6) 		989.5
(3) 		570.7
(-3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 690
(-1)
P 		590.7
(-1.7)
P 		1325.9
(3)
P 		643.3
(-1.3)
P 		378.6
(-3)
P 		408.9
(-2.8)
P 		947
B 768.4
(1.1)
P 		839.7
(1.9)
P 		928
(3)
P 		446.8
(-2.8)
P 		432.3
(-3)
P 		490
(-2.3)
P 		496
C 638.4
(1)
P 		815.5
(3)
P 		689.9
(1.6)
P 		715.1
(1.9)
P 		284.2
(-3)
P 		369.8
(-2)
P 		531
avr 698.9
(0.3) 		748.6
(0.7) 		981.3
(3) 		601.7
(-0.7) 		365
(-3) 		422.9
(-2.4) 		616
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 292.6
(3)
P 		162
(-1)
P 		236.7
(1.3)
P 		97.2
(-3)
P 		195
B 188.6
(0.2)
P 		244.3
(2.4)
P 		259.7
(3)
P 		105.1
(-3)
P 		155
C 289.7
(2)
P 		272.8
(1.6)
P 		328.3
(3)
P 		93.6
(-3)
P 		235
avr 257
(2.4) 		226.4
(1.3) 		274.9
(3) 		98.6
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 127.2
(-2.1)
P 		210.1
(0.5)
P 		288.8
(3)
P 		163.2
(-1)
P 		114.2
(-2.5)
P 		99.6
(-3)
P 		189
B 267.4
(2.5)
P 		279.5
(3)
P 		225.3
(1)
P 		118.4
(-3)
P 		175.6
(-0.9)
P 		182.7
(-0.6)
P 		161
C 236.6
(2.5)
P 		248.8
(3)
P 		175.6
(0.2)
P 		143.8
(-1)
P 		92
(-3)
P 		123.8
(-1.8)
P 		157
avr 210.4
(1.2) 		246.1
(3) 		229.9
(2.2) 		141.8
(-2.3) 		127.3
(-3) 		135.4
(-2.6) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.833
Sequence Type Exemplar sequence
Representative Public ID K07A1.10 NCBI
Target Description K07A1.10 /REP_DB=WormBase Gene ID /WP=CE11858 /TR=P90915 /GB=CAB03171.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060149 NCBI Caenorhabditis elegans K07A1.10 (K07A1.10) mRNA, complete cds. 11/11 None
K07A1.10 ENSEMBL cdna:known chromosome:CEL140:I:9623423:9624543:-1 gene:K07A1.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041856 8/11 Cross Hyb Matching Probes None
GENEFINDER00000041860 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9623353-9624474(-) 97.72 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.10
Entrez Gene 187083 Entrez gene
SwissProt P90915 EMBL-EBI
WormBase CE11858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03171 Hypothetical protein K07A1.10 [Caenorhabditis elegans] ref|NP_492550.1| K07A1.10 [Caenorhabditis elegans] 4.0E-99
blast CAE60160 Hypothetical protein CBG03712 [Caenorhabditis briggsae] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:182046_AT
ttgatgttagttttctacgtccccgtcatcgaatcattgctgctggtgggatgccaccgg
ttcaatttgattctgagcgtgaacgagcatctcgtcgtgaaagattcggaaaatatggtc
taaaaagtggtgtaccagttgaagagctgttcccaacagctgaagaaattgaggaagaag
aagccattggattgttcagagaatttaataatgctaagaaagaatacaaagaactacaga
aaaagaagagggaatcagagttagcgaggtatactttaatttctttgcgaattctttaca
caaaaatgcctgaaaaatttacaaatatgtcatctgaatccattttcagaattgctgaac
tcgagaaaaatctcaaaaagtatcctgcaacacttgcaaaatatgaagcttcattggtta
aacaagaacaagagaaagacgaaaaggaagtagcacttgaaaaacgaattcgtgacattc
aagaatactttggatattggatggatccaaaagatccaagattcgaagtgatgctacagc
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATGTTAGTTTTCTACGTCCCCG 317 703 131 Antisense
ATCATTGCTGCTGGTGGGATGCCAC 327 31 163 Antisense
GGATGCCACCGGTTCAATTTGATTC 329 513 179 Antisense
TTCTGAGCGTGAACGAGCATCTCGT 404 687 201 Antisense
GAGCATCTCGTCGTGAAAGATTCGG 523 387 215 Antisense
GTGGTGTACCAGTTGAAGAGCTGTT 423 487 257 Antisense
GAAGCCATTGGATTGTTCAGAGAAT 200 345 310 Antisense
GGGAATCAGAGTTAGCGAGGTATAC 393 493 380 Antisense
GAGGTATACTTTAATTTCTTTGCGA 666 401 396 Antisense
AATATGTCATCTGAATCCATTTTCA 606 173 454 Antisense
AAGATTCGAAGTGATGCTACAGCAA 465 155 648 Antisense
Sequence Source Affymetrix Proprietary Database