[Home] | [Total List]

[182043_s_at]

Description C01G8.6 /REP_DB=WormBase Gene ID /WP=CE07807 /TR=P91017 /GB=AAB37644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 110.1
(-3)
A 		155.8
(-1.7)
P 		315.5
(3)
P 		254.4
(1.2)
P 		205
B 118.6
(-3)
A 		183.6
(-0.4)
P 		266.7
(3)
P 		229.5
(1.5)
P 		148
C 76.9
(-3)
A 		176.3
(-0)
P 		276.9
(3)
P 		273.5
(2.9)
P 		200
avr 101.9
(-3) 		171.9
(-0.7) 		286.4
(3) 		252.5
(1.9) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 582
1 2 3 4 5 6 range
A 87.8
(-2.8)
A 		73.5
(-3)
A 		175.1
(-1.9)
P 		269
(-0.9)
P 		412.3
(0.6)
P 		631.4
(3)
P 		558
B 85.2
(-3)
A 		110
(-2.7)
A 		164
(-2.2)
P 		331.8
(-0.4)
P 		422
(0.6)
P 		652.3
(3)
P 		567
C 83.2
(-2.9)
A 		70.7
(-3)
A 		134.9
(-2.2)
M 		205.9
(-1.4)
P 		549.8
(2.7)
P 		575
(3)
P 		504
avr 85.4
(-3) 		84.7
(-3) 		158
(-2.2) 		268.9
(-0.9) 		461.4
(1.2) 		619.6
(3) 		535
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 40.1
(-2.2)
A 		33.8
(-3)
P 		82.5
(3)
P 		37.2
(-2.6)
P 		49
B 37.8
(-3)
A 		45.4
(-1.1)
P 		61.8
(3)
P 		48.9
(-0.2)
P 		24
C 25.5
(-3)
A 		50.7
(-0.9)
P 		96.5
(3)
P 		46.1
(-1.3)
P 		71
avr 34.5
(-3) 		43.3
(-1.8) 		80.3
(3) 		44.1
(-1.7) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 16.2
(-3)
A 		26.2
(-2.6)
A 		38.1
(-2)
P 		68.2
(-0.7)
P 		124.4
(1.7)
P 		153.7
(3)
P 		138
B 29.6
(-3)
A 		36.6
(-2.8)
A 		39.8
(-2.7)
P 		87.9
(-1.4)
P 		171.5
(1)
P 		243.2
(3)
P 		214
C 30.8
(-2.7)
A 		21.6
(-3)
A 		34.3
(-2.6)
M 		41.4
(-2.3)
P 		177.9
(2.5)
P 		192.5
(3)
P 		171
avr 25.5
(-3) 		28.1
(-2.9) 		37.4
(-2.6) 		65.8
(-1.6) 		157.9
(1.6) 		196.5
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182043_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2000
Sequence Type Exemplar sequence
Representative Public ID C01G8.6 NCBI
Target Description C01G8.6 /REP_DB=WormBase Gene ID /WP=CE07807 /TR=P91017 /GB=AAB37644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059160 NCBI Caenorhabditis elegans C01G8.6 (C01G8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000016699 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5298975:5300309:-1 11/11 None
C01G8.6 ENSEMBL cdna:known chromosome:CEL140:I:5298781:5300334:-1 gene:C01G8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016695 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5298974-5300309(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G8.6
Entrez Gene 172175 Entrez gene
SwissProt P91017 EMBL-EBI
WormBase CE07807 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37644 Hypothetical protein C01G8.6 [Caenorhabditis elegans] ref|NP_491561.1| C01G8.6 [Caenorhabditis elegans] 1.0E-143
blast CAE66946 Hypothetical protein CBG12338 [Caenorhabditis briggsae] 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:182043_S_AT
gatacggcggctggactgaagtcgtcaactggagagctgcgaaaaagccacaaagtgtgg
ctccctcgcaaagttcaaccaagaaaactctttccaacaatggaaccactactgatcatg
gtataacttctgcttcacgccgaactccaaactcgacacatgttgcttcaaagcctcaac
ttaatacgagagctacatctgtccaggggtctgctccatccagcggctccaaatcgcgta
tcccgtcgttggcaaatcggcaggtttacaacaactctccacagctgttccacccttttc
caccaagccgctgcaattcatccaacggatcatatgcatccacagttacagcttctccga
gcgttgcttcttactctccaaatccttctcaaccaccaccaccagtggctgttgctaagc
tgaacatgaagatgaccatcaccactgactcgaatggaaaaatgagtgttcatttctcga
actcaaactcgtcggagtcctggtctatcaatggtcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACGGCGGCTGGACTGAAGTCGT 239 423 488 Antisense
TCATGGTATAACTTCTGCTTCACGC 110 623 603 Antisense
GAACTCCAAACTCGACACATGTTGC 253 349 629 Antisense
ATACGAGAGCTACATCTGTCCAGGG 331 23 671 Antisense
GCGTATCCCGTCGTTGGCAAATCGG 686 289 723 Antisense
CGGCAGGTTTACAACAACTCTCCAC 92 241 745 Antisense
AAGCCGCTGCAATTCATCCAACGGA 458 149 792 Antisense
TATGCATCCACAGTTACAGCTTCTC 552 657 820 Antisense
CCACCACCAGTGGCTGTTGCTAAGC 598 273 883 Antisense
AACTCAAACTCGTCGGAGTCCTGGT 503 137 967 Antisense
GAGTCCTGGTCTATCAATGGTCTTC 98 401 982 Antisense
Sequence Source Affymetrix Proprietary Database