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[182042_at]

Description T22E7.2 /REP_DB=WormBase Gene ID /WP=CE13960 /TR=Q9N5D8 /GB=AAF39971.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 57.6
(-1.4)
A 		31.7
(-2.5)
A 		18.7
(-3)
A 		168.6
(3)
P 		150
B 70.6
(1)
A 		9.2
(-3)
A 		52
(-0.2)
A 		100.6
(3)
A 		91
C 74.2
(1)
P 		9.3
(-3)
A 		16.7
(-2.5)
A 		106
(3)
P 		97
avr 67.5
(-0.2) 		16.7
(-3) 		29.1
(-2.3) 		125.1
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 42.2
(1.3)
A 		45.1
(1.7)
A 		12
(-3)
A 		54.6
(3)
A 		27.5
(-0.8)
A 		39.6
(0.9)
A 		43
B 62.1
(1.6)
A 		77.4
(3)
A 		11.2
(-3)
A 		44.6
(0)
A 		59.7
(1.4)
P 		24.3
(-1.8)
A 		66
C 51.8
(3)
A 		40.7
(1.5)
A 		8.1
(-2.9)
A 		9
(-2.8)
A 		41.6
(1.6)
A 		7.4
(-3)
A 		44
avr 52
(2.7) 		54.4
(3) 		10.4
(-3) 		36.1
(0.5) 		42.9
(1.4) 		23.8
(-1.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21
(1.9)
A 		6.9
(-2.4)
A 		4.9
(-3)
A 		24.7
(3)
P 		20
B 22.5
(3)
A 		2.3
(-3)
A 		12.1
(-0.1)
A 		21.4
(2.7)
A 		20
C 24.5
(3)
P 		2.7
(-3)
A 		5.8
(-2.1)
A 		17.9
(1.2)
P 		22
avr 22.7
(3) 		4
(-3) 		7.6
(-1.8) 		21.3
(2.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.8
(-0.7)
A 		16
(3)
A 		2.6
(-3)
A 		13.8
(2)
A 		8.3
(-0.4)
A 		9.6
(0.1)
A 		13
B 21.6
(1.9)
A 		25.8
(3)
A 		2.7
(-3)
A 		11.8
(-0.6)
A 		24.3
(2.6)
P 		9.1
(-1.3)
A 		23
C 19.2
(3)
A 		12.4
(0.7)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		13.5
(1)
A 		2.5
(-2.8)
A 		17
avr 16.2
(2.3) 		18.1
(3) 		2.5
(-3) 		9.1
(-0.5) 		15.4
(2) 		7.1
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.701
Sequence Type Exemplar sequence
Representative Public ID T22E7.2 NCBI
Target Description T22E7.2 /REP_DB=WormBase Gene ID /WP=CE13960 /TR=Q9N5D8 /GB=AAF39971.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059274 NCBI Caenorhabditis elegans T22E7.2 (T22E7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030130 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5772247:5776326:1 11/11 None
T22E7.2 ENSEMBL cdna:known chromosome:CEL140:I:5775180:5776326:1 gene:T22E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030126 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5775179-5776326(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22E7.2
Entrez Gene 188748 Entrez gene
SwissProt Q9N5D8 EMBL-EBI
WormBase CE34376 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39971 Hypothetical protein T22E7.2 [Caenorhabditis elegans] ref|NP_491675.2| T22E7.2 [Caenorhabditis elegans] 1.0E-152
blast AAF39971 Hypothetical protein T22E7.2 [Caenorhabditis elegans] ref|NP_491675.2| T22E7.2 [Caenorhabditis elegans] 1.0E-150
blast CAE67387 Hypothetical protein CBG12872 [Caenorhabditis briggsae] 3.0E-86
blast CAE67387 Hypothetical protein CBG12872 [Caenorhabditis briggsae] 7.0E-86
blast AAU89702 DHHC-containing protein 10 [Mus musculus] ref|XP_127421.3| PREDICTED: zinc finger, DHHC domain containing 11 [Mus musculus] 2.0E-20
blast NP_177101 zinc finger (DHHC type) family protein [Arabidopsis thaliana] ref|NP_974114.1| zinc finger (DHHC type) family protein [Arabidopsis thaliana] 6.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.2E-16
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491675.2 2 82-104,132-154
T22E7.2 2 82-104,132-154
GENEFINDER00000030130 4 15-34,41-63,142-164,191-213
Sequence
Target Sequence 
>C. ELEGANS:182042_AT
ctttgatcatcattgtgtttggctcaataattgtattggagggaagaactacaggccatt
cgttgttctcgtgatatgcgtcaacgtattttcaatgttctgtttcggcctctcagttgt
tatatttttctcttggattacaaacagtgatgagagagctttaattaaattagtacagga
taaagttgttcaaacagatttcctgaaaatttcatgggtatttctatgcgttatttgcat
aattatatatggtgttttatcagttacaactgctcatttactatattttcatttcaaatt
attcaaagtcggacagacaacttatcgatacatgacaaatcaaaggagaagtgcaaaagt
cggggctatatcccacgtttctccaacacattctcaaacacaccgtagagatggagatat
agaagaaggtgttcaaatggacgaaatgggaaatcctccattatctccaatattagagga
tgattatgatggacaacggattactgtaacagttgaagcacctactccaactccaaatgg
ttcaactgtaagtactgcaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGATCATCATTGTGTTTGGCTC 518 223 198 Antisense
GAAGAACTACAGGCCATTCGTTGTT 217 339 240 Antisense
TTCGTTGTTCTCGTGATATGCGTCA 694 695 256 Antisense
TATTTTCAATGTTCTGTTTCGGCCT 399 663 284 Antisense
TTTCGGCCTCTCAGTTGTTATATTT 513 671 300 Antisense
ACAACTGCTCATTTACTATATTTTC 367 113 463 Antisense
CAAAAGTCGGGGCTATATCCCACGT 340 189 551 Antisense
TTCTCCAACACATTCTCAAACACAC 32 695 576 Antisense
GGGAAATCCTCCATTATCTCCAATA 81 495 645 Antisense
GTAACAGTTGAAGCACCTACTCCAA 442 461 703 Antisense
GGTTCAACTGTAAGTACTGCAAGCT 75 507 736 Antisense
Sequence Source Affymetrix Proprietary Database