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[182041_s_at]

Description T10H9.3 /REP_DB=WormBase Gene ID /WP=CE18251 /TR=O76413 /GB=AAC19237.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 78      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 55      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 375.5
(3)
P 		210.1
(-3)
P 		230.3
(-2.3)
P 		251.8
(-1.5)
P 		165
B 382
(3)
P 		309
(-0.4)
P 		351.7
(1.6)
P 		253.6
(-3)
P 		128
C 518
(3)
P 		191.5
(-3)
P 		273.3
(-1.5)
P 		237.6
(-2.2)
P 		327
avr 425.2
(3) 		236.9
(-3) 		285.1
(-1.5) 		247.7
(-2.7) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 463
(0.6)
P 		379
(-2.9)
P 		375.8
(-3)
P 		403.4
(-1.9)
P 		423.1
(-1.1)
P 		521.4
(3)
P 		146
B 432.9
(-0.7)
P 		359.2
(-2.3)
P 		330.2
(-3)
P 		373.7
(-2)
P 		427.9
(-0.8)
P 		594.6
(3)
P 		264
C 352.4
(-1.9)
P 		361.4
(-1.8)
P 		340.4
(-2)
P 		267
(-3)
P 		424.2
(-0.9)
P 		725.6
(3)
P 		459
avr 416.1
(-1.5) 		366.5
(-2.6) 		348.8
(-3) 		348
(-3) 		425.1
(-1.3) 		613.9
(3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 136.7
(3)
P 		45.6
(-2.5)
P 		60.2
(-1.6)
P 		36.9
(-3)
P 		100
B 121.8
(3)
P 		76.3
(-1)
P 		81.5
(-0.6)
P 		54
(-3)
P 		68
C 171.5
(3)
P 		55
(-2.3)
P 		95.3
(-0.5)
P 		40.1
(-3)
P 		131
avr 143.3
(3) 		59
(-2.1) 		79
(-0.9) 		43.7
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 85.3
(-2.6)
P 		134.8
(3)
P 		81.8
(-3)
P 		102.3
(-0.7)
P 		127.7
(2.2)
P 		126.9
(2.1)
P 		53
B 150.6
(-0)
P 		119.6
(-1.3)
P 		80.2
(-3)
P 		99
(-2.2)
P 		173.9
(1)
P 		221.7
(3)
P 		142
C 130.6
(-0.6)
P 		110.3
(-1.2)
P 		86.6
(-2)
P 		53.7
(-3)
P 		137.3
(-0.3)
P 		242.9
(3)
P 		189
avr 122.2
(-0.9) 		121.6
(-1) 		82.9
(-3) 		85
(-2.9) 		146.3
(0.3) 		197.2
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182041_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11950
Sequence Type Exemplar sequence
Representative Public ID T10H9.3 NCBI
Target Description T10H9.3 /REP_DB=WormBase Gene ID /WP=CE18251 /TR=O76413 /GB=AAC19237.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072286 NCBI Caenorhabditis elegans T10H9.3 (T10H9.3) mRNA, complete cds. 11/11 None
SNAP00000019217 ENSEMBL cdna:SNAP chromosome:CEL140:V:6656346:6658042:-1 11/11 None
GENEFINDER00000019224 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6656346:6658042:-1 11/11 None
T10H9.3 ENSEMBL cdna:known chromosome:CEL140:V:6656301:6658042:-1 gene:T10H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6656346-6658043(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10H9.3
Entrez Gene 179055 Entrez gene
SwissProt O76413 EMBL-EBI
WormBase CE18251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504687 T10H9.3 [Caenorhabditis elegans] gb|AAC19237.1| Hypothetical protein T10H9.3 [Caenorhabditis elegans] 0.0
blast CAE71922 Hypothetical protein CBG18985 [Caenorhabditis briggsae] 1.0E-127
blast XP_782212 PREDICTED: similar to Syntaxin-18 [Strongylocentrotus purpuratus] 6.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504687.1 1 394-413
T10H9.3 1 394-413
SNAP00000019217 1 394-413
GENEFINDER00000019224 1 394-413
Sequence
Target Sequence 
>C. ELEGANS:182041_S_AT
gcaaagcacccatgtatgcagtacattccggaagaagtgaacagcgattattatttagtt
gaagaaaaatcaaatgtaaaaattcaaaaagaagatctgctagatggagaagacgctggt
tgggatgggattgacgaacttgatgttctgattgttccacaagacaaaccagtacaaaat
cgtgcgtctccgattatttttaaagaagaagttcgcaataggcgtcgtgatgttggtggt
ggatacgatgcggaacgtgaaagttatgagaagtggcgagatgagcaaggagagcagttt
gccgtggaattccaacaacaagctgagcttcgaaagaaagagtttgtaaaggaggatcag
gatgacgagattctcaagcttcagcagcatttaacggagatcgcatctttacacacggtg
ttttcagaaaaggttttggaacaagaccgtgatgttgaattaatacacgatcatgcttta
catacaaccgaaaacattaccgacggaaatgaatggattcgaaaagctatcacaaactct
ggaaaacagcgagcattccttctattttcaattgttgtactttcgttcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGCACCCATGTATGCAGTACA 617 317 640 Antisense
GACGCTGGTTGGGATGGGATTGACG 246 379 751 Antisense
AACCAGTACAAAATCGTGCGTCTCC 215 147 806 Antisense
CGTGCGTCTCCGATTATTTTTAAAG 222 223 820 Antisense
ATAGGCGTCGTGATGTTGGTGGTGG 572 21 857 Antisense
GAGCAGTTTGCCGTGGAATTCCAAC 453 389 931 Antisense
TGACGAGATTCTCAAGCTTCAGCAG 182 571 1002 Antisense
GCTTCAGCAGCATTTAACGGAGATC 618 305 1017 Antisense
ACGGAGATCGCATCTTTACACACGG 199 95 1033 Antisense
GAAAACAGCGAGCATTCCTTCTATT 44 355 1181 Antisense
TTCAATTGTTGTACTTTCGTTCGCA 326 685 1206 Antisense
Sequence Source Affymetrix Proprietary Database