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[182040_at]

Description F18G5.5 /REP_DB=WormBase Gene ID /WP=CE04413 /TR=Q19574 /GB=AAA81083.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 14.6
(-3)
A 		43.8
(-0.3)
A 		58
(1)
A 		79.5
(3)
P 		65
B 56.6
(3)
A 		41.9
(-1.2)
A 		35.5
(-3)
A 		36.6
(-2.7)
A 		21
C 13.2
(-2.7)
A 		49.5
(-1.5)
A 		5.3
(-3)
A 		182.6
(3)
P 		177
avr 28.1
(-3) 		45.1
(-1.6) 		32.9
(-2.6) 		99.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 79.1
(2)
P 		43.3
(-1.7)
A 		30.4
(-3)
A 		37.7
(-2.3)
A 		89.2
(3)
P 		56.2
(-0.4)
A 		59
B 42.2
(-0.3)
A 		73.3
(3)
P 		34.2
(-1.1)
A 		22.2
(-2.4)
A 		50.3
(0.6)
A 		16.1
(-3)
A 		57
C 39.5
(-1.4)
A 		58.3
(3)
A 		50.7
(1.2)
A 		43.1
(-0.5)
A 		32.4
(-3)
A 		48.8
(0.8)
A 		26
avr 53.6
(1.8) 		58.3
(3) 		38.4
(-2) 		34.3
(-3) 		57.3
(2.8) 		40.4
(-1.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 5.3
(-3)
A 		9.5
(-0.5)
A 		15.2
(3)
A 		11.6
(0.8)
P 		10
B 18
(3)
A 		10.3
(-1.5)
A 		8.2
(-2.8)
A 		7.8
(-3)
A 		10
C 4.4
(-2.5)
A 		14.2
(-0.4)
A 		1.8
(-3)
A 		30.8
(3)
P 		29
avr 9.2
(-2.4) 		11.3
(-0.9) 		8.4
(-3) 		16.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.6
(-0.6)
P 		15.4
(-0.4)
A 		6.6
(-3)
A 		9.6
(-2.1)
A 		26.9
(3)
P 		13.7
(-0.9)
A 		20
B 14.7
(-0.1)
A 		24.4
(3)
P 		8.3
(-2.2)
A 		5.9
(-3)
A 		20.4
(1.7)
A 		6
(-3)
A 		19
C 14.6
(0.9)
A 		17.8
(3)
A 		12.9
(-0.2)
A 		8.7
(-3)
A 		10.5
(-1.8)
A 		16.3
(2)
A 		9
avr 14.6
(0.5) 		19.2
(2.9) 		9.3
(-2.4) 		8.1
(-3) 		19.3
(3) 		12
(-0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16334
Sequence Type Exemplar sequence
Representative Public ID F18G5.5 NCBI
Target Description F18G5.5 /REP_DB=WormBase Gene ID /WP=CE04413 /TR=Q19574 /GB=AAA81083.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077158 NCBI Caenorhabditis elegans F18G5.5 (F18G5.5) mRNA, complete cds. 11/11 None
SNAP00000036138 ENSEMBL cdna:SNAP chromosome:CEL140:X:9255938:9257471:-1 9/11 None
GENEFINDER00000036144 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9255938:9257656:-1 11/11 None
F18G5.5 ENSEMBL cdna:known chromosome:CEL140:X:9255938:9257386:-1 gene:F18G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9255937-9257386(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18G5.5
Entrez Gene 184655 Entrez gene
SwissProt Q19574 EMBL-EBI
WormBase CE04413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81083 Hypothetical protein F18G5.5 [Caenorhabditis elegans] ref|NP_509559.1| F18G5.5 [Caenorhabditis elegans] 1.0E-153
blast AAA81083 Hypothetical protein F18G5.5 [Caenorhabditis elegans] ref|NP_509559.1| F18G5.5 [Caenorhabditis elegans] 1.0E-138
blast AAA81083 Hypothetical protein F18G5.5 [Caenorhabditis elegans] ref|NP_509559.1| F18G5.5 [Caenorhabditis elegans] 1.0E-118
blast CAE69849 Hypothetical protein CBG16177 [Caenorhabditis briggsae] 2.0E-34
blast CAE69849 Hypothetical protein CBG16177 [Caenorhabditis briggsae] 2.0E-32
blast CAE69849 Hypothetical protein CBG16177 [Caenorhabditis briggsae] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:182040_AT
gaaactatgaggtcgctctccagaaatatttctttcaatcccactccgaatgtggcatta
caccagaagttaccccaattgatgtatcgaatggtaccactcaagtcattgtcagtaact
ctactatcgaagatgttgagttcccatcggttgatgaaattctgaatggacgatattcca
gtctgaagtctaaaactctccgcctcgacaacattagccttaacagactaactgcgcgca
aaacggacaaatttgtttcaaaaagcaaccgatatttcgtcaccatcagaagaaaggaaa
aggggcatattattttctacgtatctggagctggaaacaaaaatgttactttgaagtcaa
tttccgatccacgtttgcctgcaaaagtgatgactgttgccaataactacgctgcattta
agtacacgaccgttggaccgaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTATGAGGTCGCTCTCCAGAA 215 357 338 Antisense
TCAATCCCACTCCGAATGTGGCATT 420 633 372 Antisense
GGCATTACACCAGAAGTTACCCCAA 439 533 391 Antisense
GGTACCACTCAAGTCATTGTCAGTA 407 503 430 Antisense
ATGTTGAGTTCCCATCGGTTGATGA 496 45 470 Antisense
GTCTGAAGTCTAAAACTCTCCGCCT 26 471 518 Antisense
CGCCTCGACAACATTAGCCTTAACA 507 257 538 Antisense
AGCAACCGATATTTCGTCACCATCA 8 77 601 Antisense
TGAAGTCAATTTCCGATCCACGTTT 409 573 689 Antisense
GACTGTTGCCAATAACTACGCTGCA 552 375 729 Antisense
GTACACGACCGTTGGACCGAATGGA 663 455 759 Antisense
Sequence Source Affymetrix Proprietary Database