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[182039_at]

Description F37C4.3 /REP_DB=WormBase Gene ID /WP=CE17046 /TR=O44402 /GB=AAB95169.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 35      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 25.9
(3)
A 		16.4
(0.5)
A 		3.3
(-3)
A 		10.7
(-1)
A 		23
B 28.3
(-0.8)
A 		67.2
(3)
A 		6.1
(-3)
A 		17.7
(-1.9)
A 		61
C 5.8
(-3)
A 		45.9
(1.8)
A 		13.7
(-2.1)
A 		56
(3)
A 		50
avr 20
(-0.9) 		43.2
(3) 		7.7
(-3) 		28.1
(0.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 5.5
(-3)
A 		25.3
(-1.6)
A 		37.9
(-0.8)
A 		93.3
(3)
P 		91.1
(2.8)
A 		22.4
(-1.8)
A 		88
B 5.2
(-3)
A 		5.4
(-3)
A 		34
(-0.7)
A 		79.2
(3)
P 		77.1
(2.8)
P 		26.7
(-1.3)
M 		74
C 31.3
(-2.7)
A 		36.9
(-2.3)
A 		26.7
(-3)
A 		66.4
(-0.1)
A 		109.2
(3)
P 		40.6
(-2)
P 		83
avr 14
(-3) 		22.5
(-2.4) 		32.9
(-1.6) 		79.6
(2) 		92.5
(3) 		29.9
(-1.8) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.4
(3)
A 		3.6
(-1.1)
A 		0.9
(-3)
A 		1.6
(-2.5)
A 		9
B 9
(-0)
A 		16.6
(3)
A 		1.4
(-3)
A 		3.8
(-2.1)
A 		15
C 1.9
(-3)
A 		13.2
(3)
A 		4.8
(-1.5)
A 		9.4
(1)
A 		11
avr 6.8
(0) 		11.1
(3) 		2.4
(-3) 		4.9
(-1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1
(-3)
A 		9
(-1.2)
A 		8.3
(-1.3)
A 		23.7
(2.1)
P 		27.5
(3)
A 		5.5
(-2)
A 		27
B 1.8
(-3)
A 		1.8
(-3)
A 		8.3
(-1.7)
A 		21
(0.9)
P 		31.3
(3)
P 		10
(-1.3)
M 		30
C 11.6
(-2)
A 		11.3
(-2.1)
A 		6.8
(-3)
A 		13.4
(-1.6)
A 		35.3
(3)
P 		13.6
(-1.6)
P 		29
avr 4.8
(-3) 		7.4
(-2.4) 		7.8
(-2.3) 		19.4
(0.3) 		31.4
(3) 		9.7
(-1.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10396
Sequence Type Exemplar sequence
Representative Public ID F37C4.3 NCBI
Target Description F37C4.3 /REP_DB=WormBase Gene ID /WP=CE17046 /TR=O44402 /GB=AAB95169.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068030 NCBI Caenorhabditis elegans F37C4.3 (F37C4.3) mRNA, complete cds. 11/11 None
SNAP00000038137 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3881846:3884607:1 11/11 None
GENEFINDER00000038141 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3881846:3884607:1 11/11 None
F37C4.3 ENSEMBL cdna:known chromosome:CEL140:IV:3881846:3884607:1 gene:F37C4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3881851-3884613(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C4.3
Entrez Gene 185419 Entrez gene
SwissProt O44402 EMBL-EBI
WormBase CE17046 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
blast T32572 hypothetical protein F37C4.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500431.1 10 12-29,33-55,78-97,137-159,171-193,197-214,264-286,311-333,340-362,372-389
F37C4.3 10 12-29,33-55,78-97,137-159,171-193,197-214,264-286,311-333,340-362,372-389
SNAP00000038137 10 12-29,33-55,78-97,137-159,171-193,197-214,264-286,311-333,340-362,372-389
GENEFINDER00000038141 10 12-29,33-55,78-97,137-159,171-193,197-214,264-286,311-333,340-362,372-389
Sequence
Target Sequence 
>C. ELEGANS:182039_AT
aggagctgcctatggttgtgaaccgttctaccccagcactcaaagtgctacttgcaagtc
aaattttacggatttcgaagaacatatacggcaggagaagccggattatgcgtttatctt
tacgcgatacatttccatcggcgctccatttgcgaaaaacgtttccagtttcgaaaacga
tgaagtttacctgacgatgaagggtcaaatgctaaaactgatctccaatatcaagtacaa
actatacattttggatgcagttccacgtattgttggcggcgcaatttttagaatagcttc
atctctgaaaaatgggacggatccagtgattcttgataaacaattagtcgacttctccga
gtacgagatggctcgaaagcggtacgcgcaactattccaggactgtaacgaaaaatgtgt
gcgggtagattatgtgccagaattctacaataatgcaaccggaacgtttcggtattttgg
cgaacgaggattttcgttcgtgacggggccaatgcacctatcaccacatggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGCTGCCTATGGTTGTGAACCG 556 45 1491 Antisense
GTTCTACCCCAGCACTCAAAGTGCT 19 443 1515 Antisense
TACGCGATACATTTCCATCGGCGCT 522 649 1611 Antisense
GCAGTTCCACGTATTGTTGGCGGCG 5 311 1747 Antisense
GGGACGGATCCAGTGATTCTTGATA 310 495 1804 Antisense
ATTAGTCGACTTCTCCGAGTACGAG 291 3 1833 Antisense
AGATGGCTCGAAAGCGGTACGCGCA 14 69 1856 Antisense
TACGCGCAACTATTCCAGGACTGTA 521 649 1873 Antisense
GTGTGCGGGTAGATTATGTGCCAGA 635 487 1907 Antisense
GATTTTCGTTCGTGACGGGGCCAAT 512 231 1979 Antisense
CAATGCACCTATCACCACATGGAAT 284 181 2000 Antisense
Sequence Source Affymetrix Proprietary Database