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[182038_at]

Description K09E3.5 /REP_DB=WormBase Gene ID /WP=CE04743 /TR=Q21395 /GB=AAA82372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.2
(-0.6)
A 		2
(-3)
A 		2
(-3)
A 		10.1
(3)
A 		8
B 5.5
(3)
A 		5.3
(2.7)
A 		1.9
(-3)
A 		4.6
(1.5)
A 		4
C 6.8
(3)
A 		1.8
(-2.2)
A 		1
(-3)
A 		3.9
(0)
A 		6
avr 5.8
(2.5) 		3
(-1.2) 		1.6
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2
(-2.9)
A 		1.9
(-3)
A 		4.4
(0.3)
A 		6.5
(3)
A 		4.1
(-0.1)
A 		2.9
(-1.7)
A 		5
B 1.4
(-2.1)
A 		1.2
(-3)
A 		2.5
(2.6)
A 		2.6
(3)
A 		1.3
(-2.6)
A 		1.4
(-2.1)
A 		1
C 2.6
(0.7)
A 		3.4
(3)
A 		2
(-1)
A 		2
(-1)
A 		1.3
(-3)
A 		1.8
(-1.6)
A 		2
avr 2
(-3) 		2.2
(-2.3) 		3
(0.5) 		3.7
(3) 		2.2
(-2.3) 		2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.9
(3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1.5
(1.4)
A 		2
B 1.8
(3)
A 		1.3
(0.9)
A 		0.4
(-3)
A 		1
(-0.4)
A 		1
C 2.2
(3)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		0.7
(-2)
A 		2
avr 2
(3) 		0.7
(-1.9) 		0.4
(-3) 		1.1
(-0.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.7
(-1.5)
A 		1
(-0)
A 		1.6
(3)
A 		1.2
(1)
A 		0.7
(-1.5)
A 		1
B 0.5
(-1)
A 		0.4
(-3)
A 		0.6
(1)
A 		0.7
(3)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0
C 1
(3)
A 		1
(3)
A 		0.5
(-2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-1)
A 		1
avr 0.6
(-3) 		0.7
(-1) 		0.7
(-1) 		0.9
(3) 		0.7
(-1) 		0.6
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17587
Sequence Type Exemplar sequence
Representative Public ID K09E3.5 NCBI
Target Description K09E3.5 /REP_DB=WormBase Gene ID /WP=CE04743 /TR=Q21395 /GB=AAA82372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078368 NCBI Caenorhabditis elegans K09E3.5 (K09E3.5) mRNA, complete cds. 11/11 None
SNAP00000022137 ENSEMBL cdna:SNAP chromosome:CEL140:X:17109332:17110507:-1 11/11 None
GENEFINDER00000022145 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17109406:17110537:-1 11/11 None
K09E3.5 ENSEMBL cdna:known chromosome:CEL140:X:17109332:17110537:-1 gene:K09E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17109331-17110537(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E3.5
Entrez Gene 187221 Entrez gene
SwissProt Q21395 EMBL-EBI
WormBase CE04743 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82372 Hypothetical protein K09E3.5 [Caenorhabditis elegans] ref|NP_510769.1| K09E3.5 [Caenorhabditis elegans] 1.0E-157
blast AAA82372 Hypothetical protein K09E3.5 [Caenorhabditis elegans] ref|NP_510769.1| K09E3.5 [Caenorhabditis elegans] 1.0E-152
blast AAA82372 Hypothetical protein K09E3.5 [Caenorhabditis elegans] ref|NP_510769.1| K09E3.5 [Caenorhabditis elegans] 1.0E-141
blast AAB53821 Hypothetical protein C08A9.9 [Caenorhabditis elegans] ref|NP_510768.1| C08A9.9 [Caenorhabditis elegans] 1.0E-58
blast AAB53821 Hypothetical protein C08A9.9 [Caenorhabditis elegans] ref|NP_510768.1| C08A9.9 [Caenorhabditis elegans] 5.0E-55
blast AAB53821 Hypothetical protein C08A9.9 [Caenorhabditis elegans] ref|NP_510768.1| C08A9.9 [Caenorhabditis elegans] 1.0E-47
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182038_AT
cacctgcgtcaatggatatttttcccatatttcagatattactacaatacgctcggtaaa
tttgagagtgaaaaaagatctcaagtttcaacaggatcgagcgttgattctcaactggtg
gacgatacctttggagatgatatggagatggacgacgattgtgaagaaggggacaacgat
gatattgtgtttgtcgaggaggttattcacgaacaatatttaaacgattgcgttcaagaa
gtgaagcctcaacatactgccatcgctcttccaccatcaccacttctcgccaataatcgc
accccctctatgtcacattttgctcgtttcagtgaagaatctatggccagggaaatcagc
tgggaagatcaagctccgaaaggagcaaaggaaaatgctccgagctacgaagccacagaa
aagtttgcgtcgagcatcacttcacaaatttatcgtctttttgaagaaaatgcggaaaaa
tcaaagctgattaaggatgttcttcaaaagactattctggctcttgatgacacaaacgcg
taccacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTGCGTCAATGGATATTTTTCC 239 201 337 Antisense
ACAGGATCGAGCGTTGATTCTCAAC 536 107 427 Antisense
GATTCTCAACTGGTGGACGATACCT 579 431 442 Antisense
AAGTGAAGCCTCAACATACTGCCAT 273 157 575 Antisense
GTCACATTTTGCTCGTTTCAGTGAA 624 463 648 Antisense
GAATCTATGGCCAGGGAAATCAGCT 27 327 673 Antisense
AAAATGCTCCGAGCTACGAAGCCAC 366 127 728 Antisense
AAAGTTTGCGTCGAGCATCACTTCA 238 123 756 Antisense
GCATCACTTCACAAATTTATCGTCT 276 309 770 Antisense
GACTATTCTGGCTCTTGATGACACA 127 373 846 Antisense
GATGACACAAACGCGTACCACAGAA 343 411 862 Antisense
Sequence Source Affymetrix Proprietary Database