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[182037_at]

Description F52D2.8 /REP_DB=WormBase Gene ID /WP=CE23759 /TR=Q9TXM2 /GB=AAF02103.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 14
(-1.4)
A 		1.9
(-2.9)
A 		1.5
(-3)
A 		48.6
(3)
A 		47
B 29.3
(3)
A 		3.1
(-3)
A 		4.2
(-2.7)
A 		2.9
(-3)
A 		26
C 2.7
(-3)
A 		4.5
(-2.7)
A 		2.4
(-3)
A 		44
(3)
A 		42
avr 15.3
(-0.4) 		3.2
(-2.9) 		2.7
(-3) 		31.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.4
(-2.1)
A 		2
(-3)
A 		16.6
(0.7)
A 		21.4
(1.9)
A 		25.7
(3)
A 		2.9
(-2.8)
A 		24
B 17.2
(0.5)
A 		9.2
(-1.4)
A 		28.2
(3)
A 		8.5
(-1.5)
A 		12.3
(-0.7)
A 		2.2
(-3)
A 		26
C 2.7
(-2.7)
A 		11.9
(0.3)
A 		2
(-2.9)
A 		14.5
(1.2)
A 		1.7
(-3)
A 		20.2
(3)
A 		19
avr 8.4
(-2.5) 		7.7
(-3) 		15.6
(3) 		14.8
(2.4) 		13.2
(1.2) 		8.4
(-2.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.1
(1.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		7.1
(3)
A 		7
B 9.4
(3)
A 		0.8
(-2.9)
A 		1
(-2.7)
A 		0.6
(-3)
A 		9
C 0.9
(-2.9)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		7.4
(3)
A 		7
avr 5.1
(3) 		0.8
(-2.9) 		0.7
(-3) 		5
(2.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2.7)
A 		0.7
(-3)
A 		3.6
(-0.5)
A 		5.4
(1)
A 		7.8
(3)
A 		0.7
(-3)
A 		7
B 6
(2.2)
A 		3.1
(-0.7)
A 		6.8
(3)
A 		2.3
(-1.5)
A 		5
(1.2)
A 		0.8
(-3)
A 		6
C 1
(-2.5)
A 		3.6
(-0)
A 		0.5
(-3)
A 		2.9
(-0.7)
A 		0.6
(-2.9)
A 		6.8
(3)
A 		6
avr 2.7
(-2.4) 		2.5
(-3) 		3.6
(0.3) 		3.5
(0) 		4.5
(3) 		2.8
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18287
Sequence Type Exemplar sequence
Representative Public ID F52D2.8 NCBI
Target Description F52D2.8 /REP_DB=WormBase Gene ID /WP=CE23759 /TR=Q9TXM2 /GB=AAF02103.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075965
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016866 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1983708:1985360:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075965 6/11 Cross Hyb Matching Probes None
F52D2.8 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1983707-1984827(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39772 Hypothetical protein C39B5.9 [Caenorhabditis elegans] ref|NP_497517.1| C39B5.9 [Caenorhabditis elegans] 2.0E-64
blast AAK68898 Hypothetical protein Y54F10BM.7 [Caenorhabditis elegans] ref|NP_497530.2| Y54F10BM.7 [Caenorhabditis elegans] 1.0E-60
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-65
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.9E-11
Sequence
Target Sequence 
>C. ELEGANS:182037_AT
atacgacgtttttgcatctttcattgactttttgaaatcaaaaaaatttattcactctga
gatgatagtttttcacaaattcccattcgatgacgtcatttctatccttccatatttcga
tgcacaaacactggagacgattgagttgtgccgttttggctcactggatcaatttgaacg
gataatttatttggatcagtggagaaatgcgaagaccttcaaatttgaaaattcctattt
ttgcagtaagttactggttcatttgtttcattttcaatgtttttatatcaacgaaatgct
cgactttacaacacaagttgcagttaaaattagagatgatctcatgagaagaagtacatt
tcaatgttgtcagatttatttcgaaaaatctgactcaatggagcttgcaaaagtattcaa
accggactatactggcggaattgaattcaacatcgaattttctgatgataacttaaattt
cttggttacttgttcacgtttgcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGACGTTTTTGCATCTTTCATT 526 23 474 Antisense
GATAGTTTTTCACAAATTCCCATTC 224 425 537 Antisense
TCATTTCTATCCTTCCATATTTCGA 642 619 569 Antisense
ATTTCGATGCACAAACACTGGAGAC 603 15 587 Antisense
GACGATTGAGTTGTGCCGTTTTGGC 532 375 609 Antisense
CCGTTTTGGCTCACTGGATCAATTT 219 265 624 Antisense
GTAAGTTACTGGTTCATTTGTTTCA 68 461 719 Antisense
TGCTCGACTTTACAACACAAGTTGC 50 579 770 Antisense
AAATCTGACTCAATGGAGCTTGCAA 362 117 859 Antisense
GGACTATACTGGCGGAATTGAATTC 450 523 897 Antisense
GGTTACTTGTTCACGTTTGCATTTT 408 499 957 Antisense
Sequence Source Affymetrix Proprietary Database