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[182036_s_at]

Description CTEL4X.1 /REP_DB=WormBase Gene ID /WP=CE27359 /TR=Q9U3L1 /GB=CAA21781.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 57.8
(-0.5)
A 		14.4
(-3)
A 		68.5
(0.1)
A 		120.4
(3)
A 		106
B 53.6
(-2.2)
A 		108.7
(3)
A 		45.4
(-3)
A 		52.8
(-2.3)
A 		63
C 27.3
(-2)
A 		74.3
(0.4)
A 		7.8
(-3)
A 		126.5
(3)
A 		119
avr 46.2
(-2.4) 		65.8
(-0.5) 		40.6
(-3) 		99.9
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 24.5
(-1.5)
A 		80.5
(3)
A 		5.1
(-3)
A 		41.3
(-0.1)
A 		11.1
(-2.5)
A 		8.4
(-2.7)
A 		75
B 11.5
(3)
A 		6.9
(-2.9)
A 		6.8
(-3)
A 		10.1
(1.2)
A 		11.1
(2.5)
A 		7.5
(-2.1)
A 		5
C 7.3
(-2.8)
A 		5
(-3)
A 		72.7
(3)
A 		20.7
(-1.6)
A 		6.8
(-2.8)
A 		14.3
(-2.2)
A 		68
avr 14.4
(-1.7) 		30.8
(3) 		28.2
(2.3) 		24
(1.1) 		9.7
(-3) 		10.1
(-2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21
(3)
A 		3.1
(-3)
A 		17.9
(2)
A 		17.6
(1.9)
A 		18
B 17.1
(-0.6)
A 		26.8
(3)
A 		10.5
(-3)
A 		11.3
(-2.7)
A 		16
C 9
(-1)
A 		21.4
(3)
A 		2.7
(-3)
A 		21.3
(3)
A 		19
avr 15.7
(1.7) 		17.1
(3) 		10.4
(-3) 		16.7
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.5
(-2.3)
A 		28.6
(3)
A 		1.1
(-3)
A 		10.5
(-0.9)
A 		3.4
(-2.5)
A 		2
(-2.8)
A 		28
B 4
(2)
A 		2.3
(-1.6)
A 		1.6
(-3)
A 		2.7
(-0.7)
A 		4.5
(3)
A 		2.8
(-0.5)
A 		3
C 2.7
(-2.6)
A 		1.5
(-3)
A 		18.5
(3)
A 		4.2
(-2)
A 		2.2
(-2.8)
A 		4.8
(-1.8)
A 		17
avr 3.7
(-2.6) 		10.8
(3) 		7.1
(0.1) 		5.8
(-0.9) 		3.4
(-2.8) 		3.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182036_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10827
Sequence Type Exemplar sequence
Representative Public ID CTEL4X.1 NCBI
Target Description CTEL4X.1 /REP_DB=WormBase Gene ID /WP=CE27359 /TR=Q9U3L1 /GB=CAA21781.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067449(11), NM_067455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067449 NCBI Caenorhabditis elegans Y38C1AB.4 (Y38C1AB.4) mRNA, complete cds. 11/11 A 
NM_067455 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-5) (frm-5) mRNA, complete cds. 11/11 A 
SNAP00000022363 ENSEMBL cdna:SNAP chromosome:CEL140:IV:45826:48844:-1 11/11 None
GENEFINDER00000022364 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:46363:48844:-1 11/11 None
SNAP00000032132 ENSEMBL cdna:SNAP chromosome:CEL140:IV:644:9937:1 11/11 None
GENEFINDER00000032150 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:695:8548:1 11/11 None
Y38C1AB.4 ENSEMBL cdna:known chromosome:CEL140:IV:695:14926:1 gene:Y38C1AB.4 11/11 A 
Y38C1AB.8 ENSEMBL cdna:known chromosome:CEL140:IV:32953:47184:-1 gene:Y38C1AB.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:694-1197(+) 96.36 96.36
chrIV:46681-47184(-) 96.17 96.17
Public Domain and Genome References
Gene Title

Gene Symbol frm-5
Ensembl Y38C1AB.4
Y38C1AB.8
Entrez Gene 176821 Entrez gene
176822 Entrez gene
SwissProt Q9N531 EMBL-EBI
Q9N530 EMBL-EBI
WormBase CE25254 Wormbase
CE27782 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60499 Hypothetical protein Y38C1AB.4 [Caenorhabditis elegans] ref|NP_499850.1| Y38C1AB.4 [Caenorhabditis elegans] 0.0
blast CAE58494 Hypothetical protein CBG01639 [Caenorhabditis briggsae] 0.0
blast AAF60494 Ferm domain (protein4.1-ezrin-radixin-moesin) family protein 5 [Caenorhabditis elegans] ref|NP_499856.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 3.7E-7
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.1E-9
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.3E-8
Pfam IPR000299 EMBL-EBI Band 4.1 3.7E-7
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.1E-9
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.3E-8
Pfam IPR000299 EMBL-EBI Band 4.1 3.7E-7
Pfam IPR000299 EMBL-EBI Band 4.1 3.7E-7
Sequence
Target Sequence 
>C. ELEGANS:182036_S_AT
ggttttcactacgacgagtactgcgaataacaatgtgaaacgagccgtcgaatatttcga
agatgataatcaagatgatgcactaacatccacttcatccggcaacagtacacagaagga
atcgtctccgttcacagattttgatgatgttccgccgccaccagtggctccagaaactcc
ggctccagcccaaaaccgccgagaatctgcgtcccccgaacgtcaattccttgatgagag
tcacctcggcggaattggatctccgttatcacagagtacaaggctcgatgagacgtttat
tgaggaatactctattgagttggacacctctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTCACTACGACGAGTACTGCG 550 505 48 Antisense
TGATGCACTAACATCCACTTCATCC 245 567 123 Antisense
ACTTCATCCGGCAACAGTACACAGA 528 103 139 Antisense
CACAGAAGGAATCGTCTCCGTTCAC 415 191 158 Antisense
ATCGTCTCCGTTCACAGATTTTGAT 525 35 168 Antisense
CAAAACCGCCGAGAATCTGCGTCCC 171 189 238 Antisense
CCCCGAACGTCAATTCCTTGATGAG 471 261 261 Antisense
CCTTGATGAGAGTCACCTCGGCGGA 1 271 276 Antisense
GTCACCTCGGCGGAATTGGATCTCC 581 465 287 Antisense
TTGGATCTCCGTTATCACAGAGTAC 609 707 302 Antisense
ACTCTATTGAGTTGGACACCTCTGG 66 99 356 Antisense
Sequence Source Affymetrix Proprietary Database