[Home] | [Total List]

[182035_at]

Description B0261.6 /REP_DB=WormBase Gene ID /WP=CE07708 /TR=O01440 /GB=AAB52355.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4.2
(-1.2)
A 		2.7
(-3)
A 		6.3
(1.3)
A 		7.7
(3)
A 		5
B 9
(3)
A 		8
(2)
A 		3.2
(-3)
A 		4.9
(-1.2)
A 		6
C 12.4
(-1.3)
A 		10.6
(-1.6)
A 		2.2
(-3)
A 		37.5
(3)
A 		35
avr 8.5
(-0.8) 		7.1
(-1.5) 		3.9
(-3) 		16.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 6.8
(-2.8)
A 		4.7
(-3)
A 		4.8
(-3)
A 		31.4
(-0.9)
A 		59.7
(1.3)
A 		81.3
(3)
A 		77
B 3.4
(-3)
A 		4
(-3)
A 		4
(-3)
A 		8.8
(-2.6)
A 		85.9
(3)
A 		78.7
(2.5)
A 		83
C 7.9
(-2.9)
A 		6.1
(-3)
A 		11.6
(-2.6)
A 		10.4
(-2.7)
A 		86.4
(2.9)
A 		87.6
(3)
A 		82
avr 6
(-2.9) 		4.9
(-3) 		6.8
(-2.9) 		16.9
(-2.1) 		77.3
(2.6) 		82.5
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(2.4)
A 		0.6
(-3)
A 		1.6
(3)
A 		1.1
(0)
A 		1
B 2.9
(3)
A 		2
(0.5)
A 		0.7
(-3)
A 		1
(-2.2)
A 		2
C 4.1
(0.6)
A 		3
(-0.6)
A 		0.8
(-3)
A 		6.3
(3)
A 		6
avr 2.8
(3) 		1.9
(0) 		1
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		1.7
(-2.8)
A 		1
(-3)
A 		8
(-0.8)
A 		18
(2.4)
A 		19.8
(3)
A 		19
B 1.2
(-3)
A 		1.3
(-2.9)
A 		1
(-3)
A 		2.3
(-2.8)
A 		34.9
(3)
A 		29.4
(2)
A 		34
C 2.9
(-2.8)
A 		1.9
(-3)
A 		2.9
(-2.8)
A 		2.1
(-3)
A 		28
(2.7)
A 		29.3
(3)
A 		27
avr 1.8
(-3) 		1.6
(-3) 		1.6
(-3) 		4.1
(-2.4) 		27
(3) 		26.2
(2.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.941
Sequence Type Exemplar sequence
Representative Public ID B0261.6 NCBI
Target Description B0261.6 /REP_DB=WormBase Gene ID /WP=CE07708 /TR=O01440 /GB=AAB52355.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059150(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059150 NCBI Caenorhabditis elegans B0261.6 (B0261.6) mRNA, complete cds. 9/11 None
B0261.6 ENSEMBL cdna:known chromosome:CEL140:I:5255557:5256900:-1 gene:B0261.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040716 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5255556-5256900(-) 66.47 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.6
Entrez Gene 172166 Entrez gene
SwissProt O01440 EMBL-EBI
WormBase CE29532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52355 Hypothetical protein B0261.6 [Caenorhabditis elegans] ref|NP_491551.1| B0261.6 [Caenorhabditis elegans] 1.0E-36
blast CAE67375 Hypothetical protein CBG12852 [Caenorhabditis briggsae] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:182035_AT
gccgtggatcaaaacgttgcccgacagggatgagctcgaatgtaacgcgtgtccttctgt
ccctatgtagtttgatctctgatcagagcaacgaaattttgggaaaccttatgctaaatg
cgcagcagacatcgatcgaggtccgcgatagacaccgtatatctaatgtgttttctcaaa
aaagtcgggggccgcgccgtaggtgcggtccacggctggacatggtgcatcgagcttctc
cgaggattcgtcttgtcgttgctccagatctgacaatctaccatggagatcgtaagcaat
cctaccagctcgctgacaaggggaaaatggtcgttatcaaccggaaaaatggggtgattg
tctacatgcttcgttgtgtcgacggccgtcgtgtctacattgagaaatcttccgaaggag
ccagtcttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGTGGATCAAAACGTTGCCCGAC 280 283 47 Antisense
GTTGCCCGACAGGGATGAGCTCGAA 690 439 62 Antisense
TGAGCTCGAATGTAACGCGTGTCCT 237 569 77 Antisense
TCCACGGCTGGACATGGTGCATCGA 269 589 255 Antisense
CTCCGAGGATTCGTCTTGTCGTTGC 592 229 284 Antisense
GTCGTTGCTCCAGATCTGACAATCT 639 473 301 Antisense
GATCGTAAGCAATCCTACCAGCTCG 324 415 334 Antisense
ACCAGCTCGCTGACAAGGGGAAAAT 641 85 350 Antisense
GATTGTCTACATGCTTCGTTGTGTC 486 433 402 Antisense
TTGTGTCGACGGCCGTCGTGTCTAC 227 705 420 Antisense
TCTTCCGAAGGAGCCAGTCTTATTC 408 615 454 Antisense
Sequence Source Affymetrix Proprietary Database