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[182034_at]

Description T05E8.1 /REP_DB=WormBase Gene ID /WP=CE13241 /TR=O01596 /GB=AAB52425.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.2
(-3)
A 		4.6
(2.1)
A 		2.2
(-1.5)
A 		5.2
(3)
A 		4
B 2.7
(1.7)
A 		3.1
(3)
A 		1.2
(-3)
A 		3
(2.7)
A 		2
C 2.1
(-2.3)
A 		4.2
(3)
A 		1.8
(-3)
A 		2.6
(-1)
A 		2
avr 2
(-2.2) 		4
(3) 		1.7
(-3) 		3.6
(2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.4
(-0.6)
A 		2.3
(-3)
A 		2.6
(-2.4)
A 		5.1
(3)
A 		3.8
(0.2)
A 		4.2
(1.1)
A 		3
B 1.4
(-1.1)
A 		2.7
(3)
A 		1.7
(-0.2)
A 		2.5
(2.4)
A 		0.8
(-3)
A 		1.1
(-2.1)
A 		2
C 1.2
(-3)
A 		3.1
(-2.4)
A 		19.1
(3)
A 		2.9
(-2.4)
A 		5.5
(-1.6)
A 		3.1
(-2.4)
A 		18
avr 2
(-3) 		2.7
(-2.3) 		7.8
(3) 		3.5
(-1.4) 		3.4
(-1.6) 		2.8
(-2.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-3)
A 		1
(3)
A 		0.6
(-1)
A 		0.8
(1)
A 		1
B 0.9
(3)
A 		0.8
(2)
A 		0.3
(-3)
A 		0.6
(-0)
A 		1
C 0.7
(-0.8)
A 		1.2
(3)
A 		0.6
(-1.5)
A 		0.4
(-3)
A 		1
avr 0.7
(-0.6) 		1
(3) 		0.5
(-3) 		0.6
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.8
(-1.3)
A 		0.6
(-3)
A 		1.3
(3)
A 		1.2
(2.1)
A 		1
(0.4)
A 		1
B 0.5
(-1)
A 		0.9
(3)
A 		0.4
(-2)
A 		0.7
(1)
A 		0.3
(-3)
A 		0.4
(-2)
A 		1
C 0.4
(-3)
A 		0.9
(-2.3)
A 		4.9
(3)
A 		0.6
(-2.7)
A 		1.8
(-1.1)
A 		1
(-2.2)
A 		5
avr 0.5
(-3) 		0.9
(-1.4) 		2
(3) 		0.9
(-1.4) 		1.1
(-0.6) 		0.8
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.395
Sequence Type Exemplar sequence
Representative Public ID T05E8.1 NCBI
Target Description T05E8.1 /REP_DB=WormBase Gene ID /WP=CE13241 /TR=O01596 /GB=AAB52425.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059201 NCBI Caenorhabditis elegans T05E8.1 (T05E8.1) mRNA, complete cds. 11/11 None
SNAP00000033225 ENSEMBL cdna:SNAP chromosome:CEL140:I:5455480:5458229:-1 11/11 None
GENEFINDER00000033232 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5455733:5459526:-1 11/11 None
T05E8.1 ENSEMBL cdna:known chromosome:CEL140:I:5455733:5459526:-1 gene:T05E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5455732-5459526(-) 100.0 100.0
chrI:8635322-8639240(-) 91.24 91.24
Public Domain and Genome References
Gene Title
Ensembl T05E8.1
Entrez Gene 188128 Entrez gene
SwissProt O01596 EMBL-EBI
WormBase CE13241 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52425 Hypothetical protein T05E8.1 [Caenorhabditis elegans] ref|NP_491602.1| T05E8.1 [Caenorhabditis elegans] 0.0
blast CAB02109 Hypothetical protein F43G9.6 [Caenorhabditis elegans] ref|NP_492337.1| FERtilization defective (abnormal sperm) family member (fer-1) [Caenorhabditis elegans] sp|Q17388|FER1_CAEEL Sperm vesicle fusion protein fer-1 gb|AAB02243.1| FER-1 0.0
blast CAE68964 Hypothetical protein CBG14944 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182034_AT
cacgtacaaccagcagacatcgaaagattcattgttttgtatgaagtacagacaaaggaa
cccacattgaaatggaaagatgaatctgatatttacgatggaaaatgggttaagacgaaa
gaagttccacctcttgaaaatgaatggaatgctgttggtccttggattgtgatgaacact
cggcagacgttcgttccgaaacttggacaacacacggctcatgacaaagcttttgaaatc
cagaagagagctgaaaccggaacatggaaacactttcaatacacggattgctacgctgac
gagctgaaacccaaggatcttgacaaacacgtgaaaggatggcaagtaggctcttgggat
caagacaaattccggaacaatggagacgagaaaggatgtgtgtactcgacaaatggcgtt
ttcattggaagcggagtcctgccagaccgagaagaaaaagttcaccacaacttcagaaaa
cgttgtatcgagaggccaaggaagcatgaaggctataacaaggagtttgaagactttgct
cgttttcgtaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTACAACCAGCAGACATCGAAA 647 199 2098 Antisense
GACGAAAGAAGTTCCACCTCTTGAA 606 379 2211 Antisense
TGAACACTCGGCAGACGTTCGTTCC 443 571 2270 Antisense
GGCAGACGTTCGTTCCGAAACTTGG 467 517 2279 Antisense
AACACACGGCTCATGACAAAGCTTT 446 135 2306 Antisense
CACGGATTGCTACGCTGACGAGCTG 354 199 2379 Antisense
GCTGACGAGCTGAAACCCAAGGATC 347 295 2392 Antisense
GGATGGCAAGTAGGCTCTTGGGATC 519 513 2434 Antisense
GTGTACTCGACAAATGGCGTTTTCA 81 483 2497 Antisense
GGCGTTTTCATTGGAAGCGGAGTCC 2 541 2512 Antisense
GAAGACTTTGCTCGTTTTCGTAAAT 672 339 2626 Antisense
Sequence Source Affymetrix Proprietary Database