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[182033_at]

Description C31E10.6 /REP_DB=WormBase Gene ID /WP=CE08506 /TR=Q93314 /GB=CAB01731.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 07      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 299.4
(3)
P 		196.6
(-3)
P 		259.3
(0.7)
P 		252.8
(0.3)
P 		103
B 271.9
(3)
P 		213.6
(-3)
P 		269.3
(2.7)
P 		245.6
(0.3)
P 		58
C 335.6
(3)
P 		213.4
(-3)
P 		230.6
(-2.2)
P 		275.8
(0.1)
P 		122
avr 302.3
(3) 		207.9
(-3) 		253.1
(-0.1) 		258.1
(0.2) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 296.2
(3)
P 		282.7
(2.4)
P 		229
(-0)
P 		206.1
(-1.1)
P 		163.1
(-3)
P 		216.6
(-0.6)
P 		133
B 373.6
(3)
P 		269.7
(-0.5)
P 		255.2
(-1)
P 		222.7
(-2.1)
P 		195
(-3)
P 		233
(-1.7)
P 		179
C 275.5
(2.5)
P 		284.5
(3)
P 		236.7
(0.1)
P 		242
(0.4)
P 		186.3
(-3)
P 		259.9
(1.5)
P 		98
avr 315.1
(3) 		279
(1.4) 		240.3
(-0.4) 		223.6
(-1.1) 		181.5
(-3) 		236.5
(-0.5) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 109
(3)
P 		42.7
(-2.5)
P 		67.8
(-0.4)
P 		37
(-3)
P 		72
B 86.7
(3)
P 		52.7
(-2.9)
P 		62.4
(-1.2)
P 		52.3
(-3)
P 		34
C 111.1
(3)
P 		61.3
(-1.6)
P 		80.4
(0.1)
P 		46.5
(-3)
P 		65
avr 102.3
(3) 		52.2
(-2.3) 		70.2
(-0.4) 		45.3
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 54.6
(-2.4)
P 		100.6
(3)
P 		49.9
(-2.9)
P 		52.3
(-2.6)
P 		49.2
(-3)
P 		52.7
(-2.6)
P 		51
B 130
(3)
P 		89.8
(-0.4)
P 		62
(-2.7)
P 		59
(-3)
P 		79.2
(-1.3)
P 		86.9
(-0.6)
P 		71
C 102.1
(3)
P 		86.8
(1.3)
P 		60.2
(-1.7)
P 		48.7
(-3)
P 		60.3
(-1.7)
P 		87
(1.3)
P 		53
avr 95.6
(3) 		92.4
(2.5) 		57.4
(-2.4) 		53.3
(-3) 		62.9
(-1.6) 		75.5
(0.1) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18040
Sequence Type Exemplar sequence
Representative Public ID C31E10.6 NCBI
Target Description C31E10.6 /REP_DB=WormBase Gene ID /WP=CE08506 /TR=Q93314 /GB=CAB01731.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077933 NCBI Caenorhabditis elegans C31E10.6 (C31E10.6) mRNA, complete cds. 11/11 None
SNAP00000027028 ENSEMBL cdna:SNAP chromosome:CEL140:X:13996276:13999045:1 11/11 None
GENEFINDER00000027033 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13996276:13999045:1 11/11 None
C31E10.6 ENSEMBL cdna:known chromosome:CEL140:X:13996227:13999209:1 gene:C31E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13996275-13999045(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31E10.6
Entrez Gene 181509 Entrez gene
SwissProt Q93314 EMBL-EBI
WormBase CE08506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01731 Hypothetical protein C31E10.6 [Caenorhabditis elegans] ref|NP_510334.1| C31E10.6 [Caenorhabditis elegans] 0.0
blast CAE63051 Hypothetical protein CBG07324 [Caenorhabditis briggsae] 2.0E-57
blast AAT81207 Hypothetical protein C16A11.2a [Caenorhabditis elegans] ref|NP_001021959.1| C16A11.2a [Caenorhabditis elegans] 1.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510334.1 1 53-75
C31E10.6 1 53-75
SNAP00000027028 1 53-75
GENEFINDER00000027033 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:182033_AT
aaatcgcccagagcattgagcaagctgtcagaaaagcctttgaggagtatattgaagttc
gccagaaaagagagcaaggttcgatggccgacaacattgacgatgatccattcagcatgc
tcaacgaaatcgatcacacaattgcgagcgacataaatgaaattttgtcaacagtcaaca
agatgatcggtcatgtgaattcaatgcctcaaccaaaggaaaggaccgagtacgactacc
gtgttgcatacattggctacacaagcgatgcttgcatgttcttgtcggattggctgggaa
aggcaaagttcctgaaagatcaacgcagaaacttgtgtgagagaaatctccgtctaagct
ttgacacgaagaaaatgtgccatctggtgaagtgcgcttctcgtgaaaatgccaaatatc
atgccctgagcgacttgctgttccagaagagaaaatatatgagcacctgggaacaagatc
ttttcaaaaaagcgggtgctggtaacaactcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGCCCAGAGCATTGAGCAAGC 402 119 1226 Antisense
GGTTCGATGGCCGACAACATTGACG 709 505 1303 Antisense
GACGATGATCCATTCAGCATGCTCA 376 379 1324 Antisense
GGACCGAGTACGACTACCGTGTTGC 141 521 1448 Antisense
GATGCTTGCATGTTCTTGTCGGATT 153 413 1492 Antisense
GAAATCTCCGTCTAAGCTTTGACAC 665 361 1568 Antisense
ATGTGCCATCTGGTGAAGTGCGCTT 595 49 1600 Antisense
GAAGTGCGCTTCTCGTGAAAATGCC 659 335 1614 Antisense
TGCCAAATATCATGCCCTGAGCGAC 154 587 1635 Antisense
CCTGAGCGACTTGCTGTTCCAGAAG 144 267 1650 Antisense
AAGCGGGTGCTGGTAACAACTCCTC 654 149 1715 Antisense
Sequence Source Affymetrix Proprietary Database