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[182032_at]

Description B0496.4 /REP_DB=WormBase Gene ID /WP=CE06716 /TR=Q17520 /GB=AAK18875.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 20.3
(-3)
A 		138.7
(3)
A 		112.9
(1.7)
A 		100.9
(1.1)
A 		118
B 90.5
(2)
A 		61.1
(-0.8)
A 		37.8
(-3)
A 		101.3
(3)
A 		64
C 77.7
(-0.9)
A 		97.6
(1)
A 		55.8
(-3)
A 		117.9
(3)
A 		62
avr 62.8
(-3) 		99.1
(2) 		68.8
(-2.2) 		106.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 22
(-2.2)
A 		51.3
(0.5)
A 		79.2
(3)
A 		69.2
(2.1)
A 		28.6
(-1.6)
A 		13.5
(-3)
A 		66
B 80.3
(3)
A 		56.1
(0.4)
A 		66.1
(1.5)
A 		23.4
(-3)
A 		63.7
(1.2)
A 		58
(0.6)
A 		57
C 68.9
(0.5)
A 		98.4
(3)
A 		28.2
(-3)
A 		68.5
(0.4)
A 		28.9
(-2.9)
A 		71.7
(0.7)
A 		70
avr 57.1
(0.6) 		68.6
(3) 		57.8
(0.7) 		53.7
(-0.2) 		40.4
(-3) 		47.7
(-1.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.4
(-3)
A 		30.1
(3)
A 		29.5
(2.8)
A 		14.8
(-1)
A 		23
B 28.9
(3)
A 		15.1
(-1.1)
A 		8.8
(-3)
A 		21.6
(0.8)
A 		20
C 25.7
(1.3)
A 		28.1
(3)
A 		19.5
(-3)
A 		19.9
(-2.7)
A 		9
avr 20.7
(-1) 		24.4
(3) 		19.3
(-2.5) 		18.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.1
(-2.7)
A 		18.2
(3)
A 		17.2
(2.6)
A 		17.6
(2.8)
A 		8.6
(-0.9)
A 		3.3
(-3)
A 		15
B 28
(3)
A 		18.7
(0.4)
A 		16
(-0.3)
A 		6.2
(-3)
A 		25.9
(2.4)
A 		21.6
(1.2)
A 		22
C 25.5
(1.8)
A 		30
(3)
A 		7.2
(-3)
A 		13.8
(-1.3)
A 		9.4
(-2.4)
A 		24
(1.4)
A 		23
avr 19.2
(1.1) 		22.3
(3) 		13.5
(-2.4) 		12.5
(-3) 		14.6
(-1.7) 		16.3
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8820
Sequence Type Exemplar sequence
Representative Public ID B0496.4 NCBI
Target Description B0496.4 /REP_DB=WormBase Gene ID /WP=CE06716 /TR=Q17520 /GB=AAK18875.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068783 NCBI Caenorhabditis elegans B0496.4 (B0496.4) mRNA, complete cds. 11/11 None
SNAP00000020641 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7424484:7425173:1 11/11 None
GENEFINDER00000020650 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7424484:7426456:1 11/11 None
B0496.4 ENSEMBL cdna:known chromosome:CEL140:IV:7424484:7425253:1 gene:B0496.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7424489-7425259(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.4
Entrez Gene 182007 Entrez gene
SwissProt Q17520 EMBL-EBI
WormBase CE06716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18875 Hypothetical protein B0496.4 [Caenorhabditis elegans] ref|NP_501184.1| B0496.4 [Caenorhabditis elegans] 1.0E-110
blast AAK18875 Hypothetical protein B0496.4 [Caenorhabditis elegans] ref|NP_501184.1| B0496.4 [Caenorhabditis elegans] 1.0E-104
blast CAE61877 Hypothetical protein CBG05862 [Caenorhabditis briggsae] 1.0E-90
blast CAE61877 Hypothetical protein CBG05862 [Caenorhabditis briggsae] 3.0E-90
Sequence
Target Sequence 
>C. ELEGANS:182032_AT
cggaacatatggtcgtgcaatcacatcacctgcacttttatcgtcttccgttggatggac
acgtccggatgtcacgtcacagatagaccgtctccgttctcaagcaacttctgttgtcag
cagtcctccaccacacgaatatgcagtaccacatgcattcagtggtagcagtaatggaac
taatgcatcaagaccacctgcagatccaaagcaaccgcagagaagtagagctgaacgttt
gagacatcgtatcagtgaaagaagaacaaatgcctacatgattcctccatcaagtacaac
tggaaaagacccggctattgacgcattgatgaataaatatctgaataaatcgaaggaaaa
tttagatgaaggcagaaaaagtagagaaagttcacgagcccaagaattactagctagaac
caatcgcgaaatgtcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAACATATGGTCGTGCAATCACA 504 241 33 Antisense
GCAATCACATCACCTGCACTTTTAT 200 323 49 Antisense
TCTTCCGTTGGATGGACACGTCCGG 548 599 76 Antisense
GTCACGTCACAGATAGACCGTCTCC 65 465 103 Antisense
TCCGTTCTCAAGCAACTTCTGTTGT 238 595 125 Antisense
GCAACTTCTGTTGTCAGCAGTCCTC 393 319 136 Antisense
TCCTCCACCACACGAATATGCAGTA 606 591 156 Antisense
TCAAGACCACCTGCAGATCCAAAGC 693 631 220 Antisense
ACAAATGCCTACATGATTCCTCCAT 664 111 298 Antisense
AAGACCCGGCTATTGACGCATTGAT 384 153 338 Antisense
AGAACCAATCGCGAAATGTCACCAA 448 73 448 Antisense
Sequence Source Affymetrix Proprietary Database