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[182031_at]

Description W02H5.5 /REP_DB=WormBase Gene ID /WP=CE21243 /TR=Q9N5D2 /GB=AAF60379.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 58.7
(-2.2)
A 		75.4
(-1.6)
A 		38.9
(-3)
A 		192.4
(3)
P 		154
B 98.9
(-0.3)
A 		66.8
(-1.9)
A 		45.6
(-3)
A 		162.5
(3)
P 		117
C 98
(-2)
A 		84
(-2.4)
A 		62.4
(-3)
A 		280.2
(3)
P 		218
avr 85.2
(-1.7) 		75.4
(-2) 		49
(-3) 		211.7
(3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 23.9
(-1.8)
A 		8.8
(-3)
A 		82.5
(3)
P 		48.9
(0.3)
A 		74
(2.3)
A 		23.8
(-1.8)
A 		74
B 69.1
(1.4)
A 		90
(3)
A 		12.2
(-3)
A 		44.7
(-0.5)
A 		49.7
(-0.1)
A 		43.1
(-0.6)
A 		78
C 26.6
(-2.4)
A 		123.9
(3)
P 		38.9
(-1.7)
A 		17.8
(-2.9)
A 		15.9
(-3)
A 		21.2
(-2.7)
A 		108
avr 39.9
(-1.6) 		74.2
(3) 		44.5
(-1) 		37.1
(-2) 		46.5
(-0.7) 		29.4
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 21.4
(0.7)
A 		16.4
(-0.9)
A 		10.2
(-3)
A 		28.2
(3)
P 		18
B 31.5
(2.2)
A 		16.5
(-1.5)
A 		10.6
(-3)
A 		34.6
(3)
P 		24
C 32.4
(-0.5)
A 		24.2
(-2.4)
A 		21.8
(-3)
A 		47.2
(3)
P 		25
avr 28.4
(0.8) 		19
(-1.7) 		14.2
(-3) 		36.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.4
(-2.6)
A 		3.1
(-3)
A 		18
(1.7)
P 		12.4
(-0.1)
A 		22.3
(3)
A 		5.8
(-2.2)
A 		19
B 24
(1.7)
A 		30
(3)
A 		3
(-3)
A 		11.8
(-1)
A 		20.2
(0.8)
A 		16.1
(-0.1)
A 		27
C 9.9
(-1.9)
A 		37.8
(3)
P 		9.9
(-1.9)
A 		3.6
(-3)
A 		5.1
(-2.7)
A 		7.1
(-2.4)
A 		34
avr 12.8
(-1.5) 		23.6
(3) 		10.3
(-2.6) 		9.3
(-3) 		15.9
(-0.2) 		9.7
(-2.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15709
Sequence Type Exemplar sequence
Representative Public ID W02H5.5 NCBI
Target Description W02H5.5 /REP_DB=WormBase Gene ID /WP=CE21243 /TR=Q9N5D2 /GB=AAF60379.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071316 NCBI Caenorhabditis elegans W02H5.5 (W02H5.5) mRNA, complete cds. 11/11 None
SNAP00000022923 ENSEMBL cdna:SNAP chromosome:CEL140:V:2618401:2618779:-1 10/11 None
GENEFINDER00000022940 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2618331:2618779:-1 11/11 None
W02H5.5 ENSEMBL cdna:known chromosome:CEL140:V:2618318:2618779:-1 gene:W02H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2618317-2618779(-) 29.44 100.0
Public Domain and Genome References
Gene Title
Ensembl W02H5.5
Entrez Gene 189137 Entrez gene
SwissProt Q9N5D2 EMBL-EBI
WormBase CE21243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503717 W02H5.5 [Caenorhabditis elegans] gb|AAF60379.1| Hypothetical protein W02H5.5 [Caenorhabditis elegans] 4.0E-46
blast NP_503717 W02H5.5 [Caenorhabditis elegans] gb|AAF60379.1| Hypothetical protein W02H5.5 [Caenorhabditis elegans] 9.0E-44
blast NP_503717 W02H5.5 [Caenorhabditis elegans] gb|AAF60379.1| Hypothetical protein W02H5.5 [Caenorhabditis elegans] 6.0E-30
blast AAK29934 Hypothetical protein Y54F10AM.7 [Caenorhabditis elegans] ref|NP_497569.1| Y54F10AM.7 [Caenorhabditis elegans] 1.0E-9
blast T31579 hypothetical protein Y105C5A.v - Caenorhabditis elegans 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.7E-5
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.9E-6
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503717.1 4 17-39,54-76,83-105,120-142
W02H5.5 4 17-39,54-76,83-105,120-142
SNAP00000022923 3 31-53,60-82,102-124
GENEFINDER00000022940 4 17-39,54-76,83-105,120-142
Sequence
Target Sequence 
>C. ELEGANS:182031_AT
atctgctttattgacggttttctacatacaaataaaaaactgggtctcgtagcgatgggt
ctcacagcgctgggtcttgacacgatgggtctcgtcacgataagtcatgtagcaatgggt
cttgccacgatgggtctcaccactgtgggtcttgctacgatgggtcgcacagcgctaggt
ctcacagcgatgggtctcgccacgctgggtctcacaattctaggccccgccacgatgggt
ctcactgttctctgtctcaccactatgggtcttgccacaatgagtctcacagcgctaggt
ctcaccacgatgggtctcaccacgatgggtctcaccacgatgggtctcacagcgctggtt
cctgtcatgataggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGCTTTATTGACGGTTTTCTAC 676 31 19 Antisense
CGTAGCGATGGGTCTCACAGCGCTG 374 247 66 Antisense
GTCTCGTCACGATAAGTCATGTAGC 259 471 107 Antisense
GTCATGTAGCAATGGGTCTTGCCAC 237 467 122 Antisense
GTCTCACCACTGTGGGTCTTGCTAC 121 471 152 Antisense
GTCTTGCTACGATGGGTCGCACAGC 121 469 167 Antisense
TACGATGGGTCGCACAGCGCTAGGT 148 643 174 Antisense
TCACCACTATGGGTCTTGCCACAAT 417 625 275 Antisense
TGGGTCTTGCCACAATGAGTCTCAC 430 553 284 Antisense
ACAATGAGTCTCACAGCGCTAGGTC 226 113 295 Antisense
AGCGCTGGTTCCTGTCATGATAGGT 127 83 369 Antisense
Sequence Source Affymetrix Proprietary Database