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[182030_at]

Description F42A6.8 /REP_DB=WormBase Gene ID /WP=CE17060 /TR=O44488 /GB=AAB92053.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 48.1
(-0.8)
A 		10.6
(-3)
A 		46.2
(-0.9)
A 		113
(3)
A 		102
B 43.2
(0.6)
A 		56.8
(3)
A 		56.6
(3)
A 		22.9
(-3)
A 		34
C 32.1
(-2.1)
A 		74.4
(3)
A 		25
(-3)
A 		70.7
(2.6)
P 		49
avr 41.1
(-3) 		47.3
(-1.7) 		42.6
(-2.7) 		68.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 83.9
(3)
A 		54.2
(0.7)
A 		49.1
(0.3)
A 		23.3
(-1.8)
A 		41.2
(-0.4)
A 		7.5
(-3)
A 		76
B 43.2
(0.7)
A 		50.6
(3)
A 		32.4
(-2.7)
A 		31.3
(-3)
A 		46.3
(1.7)
A 		38.7
(-0.7)
A 		19
C 54.4
(3)
A 		9.9
(-2.9)
A 		8.8
(-3)
A 		21.6
(-1.3)
A 		37.2
(0.7)
A 		16.6
(-2)
A 		46
avr 60.5
(3) 		38.2
(-0.4) 		30.1
(-1.6) 		25.4
(-2.3) 		41.6
(0.1) 		20.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.5
(3)
A 		2.3
(-3)
A 		12.1
(0.9)
A 		16.5
(2.6)
A 		15
B 13.8
(2.9)
A 		14
(3)
A 		13.1
(2.4)
A 		4.9
(-3)
A 		9
C 10.6
(-2.1)
A 		21.4
(3)
A 		8.7
(-3)
A 		11.9
(-1.5)
P 		13
avr 14
(3) 		12.6
(0.1) 		11.3
(-2.6) 		11.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15.5
(1.7)
A 		19.3
(3)
A 		10.7
(0.1)
A 		5.9
(-1.6)
A 		12.4
(0.6)
A 		1.8
(-3)
A 		18
B 15
(0.9)
A 		16.9
(2)
A 		7.9
(-3)
A 		8.3
(-2.8)
A 		18.8
(3)
A 		14.4
(0.6)
A 		11
C 20.2
(3)
A 		3
(-2.7)
A 		2.2
(-3)
A 		4.3
(-2.3)
A 		12
(0.3)
A 		5.6
(-1.9)
A 		18
avr 16.9
(3) 		13.1
(0.9) 		6.9
(-2.6) 		6.2
(-3) 		14.4
(1.6) 		7.3
(-2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10367
Sequence Type Exemplar sequence
Representative Public ID F42A6.8 NCBI
Target Description F42A6.8 /REP_DB=WormBase Gene ID /WP=CE17060 /TR=O44488 /GB=AAB92053.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067926 NCBI Caenorhabditis elegans F42A6.8 (F42A6.8) mRNA, complete cds. 11/11 None
SNAP00000037846 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3339788:3340546:-1 11/11 None
GENEFINDER00000037854 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3339788:3340949:-1 11/11 None
F42A6.8 ENSEMBL cdna:known chromosome:CEL140:IV:3339788:3341112:-1 gene:F42A6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3339793-3341118(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A6.8
Entrez Gene 185651 Entrez gene
SwissProt O44488 EMBL-EBI
WormBase CE17060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92053 Hypothetical protein F42A6.8 [Caenorhabditis elegans] ref|NP_500327.1| F42A6.8 [Caenorhabditis elegans] 0.0
blast AAB92053 Hypothetical protein F42A6.8 [Caenorhabditis elegans] ref|NP_500327.1| F42A6.8 [Caenorhabditis elegans] 1.0E-127
blast AAB92053 Hypothetical protein F42A6.8 [Caenorhabditis elegans] ref|NP_500327.1| F42A6.8 [Caenorhabditis elegans] 1.0E-122
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 3.0E-18
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 4.0E-18
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-17
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 2.0E-17
blast AAC16977 Hypothetical protein C33E10.2 [Caenorhabditis elegans] ref|NP_510807.1| C33E10.2 [Caenorhabditis elegans] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-48
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-48
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-48
Sequence
Target Sequence 
>C. ELEGANS:182030_AT
ggactggttgggttatctgggaaagagaatatgcaatctgtggatgactgcttcaaggct
atgaacttaccacatgcgaaggtgcttgaagtgactggaatcgactttgtggacaatatt
tcgatggtgaagtactttcgcccaggttatctcgagaaaatccgcatgtattcttgttat
tgctcagctagccaggagatgagtgaagaaattgcaaatctcgagcagtggaagcaagcg
aaacattttctgtgcattggtggtagaatgaacattcctattcaaagatttttccacttt
gaccagttctccatcggtcttcagactctatcaatcgatgatgctgttcagataagagat
attctcctcagatcgcccagcttcgagtcagcaactatcgatgttcaactacttgaaaaa
gaagccattgagaacgtctttacgccgaatcacctattaatttatagaggaagagagttc
agaccggtgggaactgattccagttttgtgatcaatataacaaaaaacaagcttgaaatc
cacaagcacaagggagctaatccaccacgtcgtagagacgaacggccaatccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGGTTGGGTTATCTGGGAAAG 186 525 382 Antisense
GTGGATGACTGCTTCAAGGCTATGA 189 489 421 Antisense
GTGACTGGAATCGACTTTGTGGACA 62 481 472 Antisense
TGAAGTACTTTCGCCCAGGTTATCT 410 573 509 Antisense
GTATTCTTGTTATTGCTCAGCTAGC 400 453 549 Antisense
AGATTTTTCCACTTTGACCAGTTCT 189 65 667 Antisense
CTCCATCGGTCTTCAGACTCTATCA 17 237 690 Antisense
GCCCAGCTTCGAGTCAGCAACTATC 463 287 756 Antisense
TGAGAACGTCTTTACGCCGAATCAC 119 569 810 Antisense
GCTAATCCACCACGTCGTAGAGACG 137 303 937 Antisense
CGTAGAGACGAACGGCCAATCCACG 240 245 952 Antisense
Sequence Source Affymetrix Proprietary Database