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[182028_at]

Description M01G5.1 /REP_DB=WormBase Gene ID /WP=CE19536 /TR=O76686 /GB=AAC26941.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 78.7
(1.9)
A 		76.6
(1.6)
A 		85.4
(3)
A 		47.2
(-3)
A 		38
B 70.3
(-1)
A 		115.7
(3)
A 		83
(0.1)
A 		48
(-3)
A 		68
C 104.7
(3)
A 		59.3
(0)
A 		55.4
(-0.3)
A 		13.7
(-3)
A 		91
avr 84.6
(3) 		83.9
(2.9) 		74.6
(1.8) 		36.3
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 20.7
(-3)
A 		57.3
(0.6)
A 		39.8
(-1.1)
A 		36.1
(-1.5)
A 		81.2
(3)
A 		38.2
(-1.3)
A 		61
B 90.6
(3)
A 		32.1
(-2.7)
A 		31.5
(-2.8)
A 		62.2
(0.2)
A 		58.4
(-0.2)
A 		29.5
(-3)
A 		61
C 54.9
(-0.4)
A 		28.8
(-3)
A 		52.9
(-0.6)
A 		89.1
(3)
A 		50.9
(-0.8)
A 		32.2
(-2.7)
A 		60
avr 55.4
(1.4) 		39.4
(-1.8) 		41.4
(-1.4) 		62.5
(2.8) 		63.5
(3) 		33.3
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 28.7
(3)
A 		16.6
(-0.3)
A 		22.3
(1.2)
A 		6.9
(-3)
A 		22
B 22.4
(1)
A 		28.6
(3)
A 		19.2
(-0.1)
A 		10.2
(-3)
A 		18
C 34.6
(3)
A 		17.1
(-0.3)
A 		19.3
(0.2)
A 		2.3
(-3)
A 		32
avr 28.6
(3) 		20.8
(0.9) 		20.3
(0.7) 		6.5
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.8
(-3)
A 		20.4
(1.8)
A 		8.7
(-1.6)
A 		9.2
(-1.4)
A 		24.5
(3)
A 		9.3
(-1.4)
A 		21
B 31.5
(3)
A 		10.7
(-2.2)
A 		7.7
(-3)
A 		16.5
(-0.8)
A 		23.7
(1)
A 		11
(-2.2)
A 		24
C 20.3
(3)
A 		8.8
(-3)
A 		13.5
(-0.5)
A 		17.9
(1.7)
A 		16.5
(1)
A 		10.8
(-2)
A 		12
avr 18.5
(1.4) 		13.3
(-1.3) 		10
(-3) 		14.5
(-0.7) 		21.6
(3) 		10.4
(-2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8276
Sequence Type Exemplar sequence
Representative Public ID M01G5.1 NCBI
Target Description M01G5.1 /REP_DB=WormBase Gene ID /WP=CE19536 /TR=O76686 /GB=AAC26941.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065012 NCBI Caenorhabditis elegans M01G5.1 (M01G5.1) mRNA, complete cds. 11/11 None
SNAP00000031209 ENSEMBL cdna:SNAP chromosome:CEL140:III:1495805:1508523:1 11/11 None
GENEFINDER00000031211 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1498087:1508529:1 11/11 None
M01G5.1 ENSEMBL cdna:known chromosome:CEL140:III:1498006:1508529:1 gene:M01G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1498005-1508529(+) 98.84 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G5.1
Entrez Gene 187377 Entrez gene
SwissProt O76686 EMBL-EBI
WormBase CE19536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497413 M01G5.1 [Caenorhabditis elegans] gb|AAC26941.1| Hypothetical protein M01G5.1 [Caenorhabditis elegans] 0.0
blast CAE66450 Hypothetical protein CBG11726 [Caenorhabditis briggsae] 1.0E-156
blast CAE66450 Hypothetical protein CBG11726 [Caenorhabditis briggsae] 1.0E-153
blast CAE66450 Hypothetical protein CBG11726 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.5
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 8.0
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 5.0
Sequence
Target Sequence 
>C. ELEGANS:182028_AT
ggccaacaaaccgcttacagtaatcccacagtgtgaaaggggcggagtcacgattgaggc
gatgcgaatcaccggaaatgaggttcaaagctcatcggacaccgccgctggagactcgtt
tttctacggattttcaccggatttaccgtttcaatggcaaattatacagggaagagcacc
gcggatgcttttggcaaaagactcaccgttggcgaataatctaccaaccaaacaaaactt
caacaaaatccaatggcacaagtcacaagtaaagcggaaatacgagcaatattcagctga
aagagaggacgaaaagcgtaaccgtacgctcgatttggacgatcccaatatttccgccga
ttttacgaatcctgccatgattcctgtgaaattcgagcgaaaattctatcctccacgtgt
ccgtggacgtcgtggtggccgtggccgaagtggtggccgaggtggtggccgtggaagaga
aagagacggcggcagccgtggaagaggtggccgaggtggccgtggaaattctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAACAAACCGCTTACAGTAATC 154 543 2118 Antisense
AGGTTCAAAGCTCATCGGACACCGC 129 57 2198 Antisense
CCGCTGGAGACTCGTTTTTCTACGG 197 261 2222 Antisense
CACCGGATTTACCGTTTCAATGGCA 678 199 2252 Antisense
GAAGAGCACCGCGGATGCTTTTGGC 55 339 2288 Antisense
GTAACCGTACGCTCGATTTGGACGA 535 23 2435 Antisense
TTGGACGATCCCAATATTTCCGCCG 324 703 2452 Antisense
TTCCGCCGATTTTACGAATCCTGCC 416 699 2469 Antisense
ATCCTGCCATGATTCCTGTGAAATT 587 39 2486 Antisense
GAGCGAAAATTCTATCCTCCACGTG 706 385 2512 Antisense
GCCGAGGTGGCCGTGGAAATTCTGG 703 283 2627 Antisense
Sequence Source Affymetrix Proprietary Database