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[182027_s_at]

Description ZK484.6 /REP_DB=WormBase Gene ID /WP=CE15347 /TR=O44899 /GB=AAK39390.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 45.7
(-3)
A 		61.2
(3)
A 		50.5
(-1.1)
A 		55.2
(0.7)
A 		16
B 5.3
(-3)
A 		62.2
(3)
A 		18.9
(-1.6)
A 		34.8
(0.1)
A 		57
C 20.6
(-3)
A 		54.3
(3)
A 		29.4
(-1.4)
A 		34
(-0.6)
A 		34
avr 23.9
(-3) 		59.2
(3) 		32.9
(-1.5) 		41.3
(-0) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 35.9
(1.4)
A 		31
(0.6)
A 		5.9
(-3)
A 		47.2
(3)
A 		30.7
(0.6)
A 		12.6
(-2)
A 		41
B 46.3
(0.1)
A 		26.3
(-3)
A 		27.9
(-2.8)
A 		39.5
(-0.9)
A 		64.7
(3)
A 		34.5
(-1.7)
A 		38
C 34.2
(3)
A 		27
(0.7)
A 		15.8
(-3)
A 		17.8
(-2.3)
A 		25.1
(0)
A 		19
(-2)
A 		18
avr 38.8
(2.6) 		28.1
(-0.1) 		16.5
(-3) 		34.8
(1.6) 		40.2
(3) 		22
(-1.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.6
(3)
A 		13.3
(0.7)
A 		13.2
(0.6)
A 		8.1
(-3)
A 		9
B 1.7
(-3)
A 		15.4
(3)
A 		4.4
(-1.8)
A 		7.4
(-0.5)
A 		14
C 6.8
(-2.3)
A 		15.6
(3)
A 		10.2
(-0.3)
A 		5.7
(-3)
A 		10
avr 8.4
(-2) 		14.8
(3) 		9.3
(-1.3) 		7.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.6
(-0)
A 		11
(2.4)
A 		1.3
(-3)
A 		12
(3)
A 		9.3
(1.5)
A 		3.1
(-2)
A 		11
B 16.1
(-0.1)
A 		8.7
(-2.4)
A 		6.8
(-3)
A 		10.5
(-1.9)
A 		26.3
(3)
A 		12.9
(-1.1)
A 		20
C 12.7
(3)
A 		8.2
(0)
A 		4
(-2.7)
A 		3.6
(-3)
A 		8.1
(-0)
A 		6.4
(-1.2)
A 		9
avr 11.8
(1.4) 		9.3
(0) 		4
(-3) 		8.7
(-0.3) 		14.6
(3) 		7.5
(-1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182027_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1141
Sequence Type Exemplar sequence
Representative Public ID ZK484.6 NCBI
Target Description ZK484.6 /REP_DB=WormBase Gene ID /WP=CE15347 /TR=O44899 /GB=AAK39390.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059355(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059355 NCBI Caenorhabditis elegans ZK484.6 (ZK484.6) mRNA, complete cds. 10/11 None
SNAP00000003126 ENSEMBL cdna:SNAP chromosome:CEL140:I:6098223:6098992:-1 10/11 None
GENEFINDER00000003130 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6098223:6098992:-1 10/11 None
ZK484.6 ENSEMBL cdna:known chromosome:CEL140:I:6098210:6098992:-1 gene:ZK484.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6098222-6098992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.6
Entrez Gene 172290 Entrez gene
SwissProt O44899 EMBL-EBI
WormBase CE34458 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39390 Hypothetical protein ZK484.6 [Caenorhabditis elegans] ref|NP_491756.2| ZK484.6 [Caenorhabditis elegans] 6.0E-74
blast AAK39390 Hypothetical protein ZK484.6 [Caenorhabditis elegans] ref|NP_491756.2| ZK484.6 [Caenorhabditis elegans] 3.0E-58
blast AAK39390 Hypothetical protein ZK484.6 [Caenorhabditis elegans] ref|NP_491756.2| ZK484.6 [Caenorhabditis elegans] 3.0E-55
blast CAE72933 Hypothetical protein CBG20255 [Caenorhabditis briggsae] 3.0E-25
blast NP_490770 Y18H1A.4 [Caenorhabditis elegans] gb|AAK21514.2| Hypothetical protein Y18H1A.4 [Caenorhabditis elegans] 6.0E-20
blast NP_490770 Y18H1A.4 [Caenorhabditis elegans] gb|AAK21514.2| Hypothetical protein Y18H1A.4 [Caenorhabditis elegans] 1.0E-19
blast NP_490770 Y18H1A.4 [Caenorhabditis elegans] gb|AAK21514.2| Hypothetical protein Y18H1A.4 [Caenorhabditis elegans] 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 2.4E-5
Sequence
Target Sequence 
>C. ELEGANS:182027_S_AT
ggtgagacatggacaacgcgtggacaatgtggacaagaagtggaaggcgaacaacgatgc
caaatgggatgatccggagctcactctccgcgggaaacaacaagcccatgaggttggaaa
gcactttgccaacatgaatatcgaggcgatcgtggtttctccattcacaagatgcatcga
gacggcagctcaaatcgttgcaatgatggagaacaaggcgaagatttgtgttgagccagg
gctcatggagccgctgtatctttgcaagaacccaccaaccatcccatctatggacaagat
caaaaatcgaggttttcagagaatactctactcaagtcgacgaaagctacaaaccagtgt
tcgagaagcttccgatttccgaaatatcattattgttttccgaaatatcattattgtttc
ccatggtactccactggcaaacatccacgctttcttgaagggacactggaagtatgttgg
acagtgcactatttccaaggtcactgacatgtatggacagtcattccgtctcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAGACATGGACAACGCGTGGAC 290 501 33 Antisense
TATCGAGGCGATCGTGGTTTCTCCA 663 657 171 Antisense
GAGACGGCAGCTCAAATCGTTGCAA 646 393 211 Antisense
GAGCCAGGGCTCATGGAGCCGCTGT 296 385 265 Antisense
GAGCCGCTGTATCTTTGCAAGAACC 70 387 280 Antisense
CACCAACCATCCCATCTATGGACAA 378 203 305 Antisense
GAGAATACTCTACTCAAGTCGACGA 538 389 351 Antisense
TCGAGAAGCTTCCGATTTCCGAAAT 702 601 393 Antisense
ATTATTGTTTCCCATGGTACTCCAC 8 15 442 Antisense
TGGTACTCCACTGGCAAACATCCAC 107 553 456 Antisense
TATGGACAGTCATTCCGTCTCGACT 553 653 544 Antisense
Sequence Source Affymetrix Proprietary Database