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[182026_s_at]

Description ZC581.9 /REP_DB=WormBase Gene ID /WP=CE27789 /TR=O01776 /GB=AAB54146.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 396.7
(3)
P 		258.8
(-3)
P 		273.3
(-2.4)
P 		311.6
(-0.7)
P 		138
B 441.4
(3)
P 		273.5
(-1.4)
P 		214.4
(-3)
P 		344.4
(0.4)
P 		227
C 383.8
(2.5)
P 		295.2
(-1.1)
P 		250.3
(-3)
P 		395.9
(3)
P 		146
avr 407.3
(3) 		275.8
(-1.9) 		246
(-3) 		350.6
(0.9) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 466.2
(3)
P 		361
(0.4)
P 		277.5
(-1.7)
P 		223.1
(-3)
P 		233.3
(-2.7)
P 		237.2
(-2.7)
P 		243
B 439.4
(3)
P 		372.8
(1)
P 		235.5
(-3)
P 		276.6
(-1.8)
P 		251.6
(-2.5)
P 		265.8
(-2.1)
P 		204
C 327.8
(2.5)
P 		335.3
(2.8)
P 		342.7
(3)
P 		319.6
(2.3)
P 		157
(-3)
P 		181.9
(-2.2)
P 		186
avr 411.1
(3) 		356.4
(1.3) 		285.2
(-0.8) 		273.1
(-1.2) 		214
(-3) 		228.3
(-2.6) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 144.5
(3)
P 		56.2
(-2.4)
P 		71.5
(-1.4)
P 		45.6
(-3)
P 		99
B 140.8
(3)
P 		67.6
(-1.8)
P 		49.7
(-3)
P 		73.4
(-1.4)
P 		91
C 127.1
(3)
P 		84.9
(-1.2)
P 		87.2
(-1)
P 		66.8
(-3)
P 		60
avr 137.5
(3) 		69.6
(-2.4) 		69.5
(-2.4) 		61.9
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 85.9
(-0.6)
P 		128.4
(3)
P 		60.4
(-2.7)
P 		56.6
(-3)
P 		70.4
(-1.8)
P 		57.7
(-2.9)
P 		72
B 152.9
(3)
P 		124.1
(1.2)
P 		57.2
(-3)
P 		73.3
(-2)
P 		102.2
(-0.2)
P 		99.1
(-0.4)
P 		96
C 121.5
(3)
P 		102.3
(1.4)
P 		87.2
(0.1)
P 		64.3
(-1.9)
P 		50.8
(-3)
P 		60.9
(-2.1)
P 		71
avr 120.1
(3) 		118.3
(2.8) 		68.3
(-2.6) 		64.7
(-3) 		74.5
(-1.9) 		72.6
(-2.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182026_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1890
Sequence Type Exemplar sequence
Representative Public ID ZC581.9 NCBI
Target Description ZC581.9 /REP_DB=WormBase Gene ID /WP=CE27789 /TR=O01776 /GB=AAB54146.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059514 NCBI Caenorhabditis elegans ZC581.9 (ZC581.9) mRNA, complete cds. 11/11 None
ZC581.9 ENSEMBL cdna:known chromosome:CEL140:I:6673317:6678537:-1 gene:ZC581.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6673287-6677103(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC581.9
Entrez Gene 172385 Entrez gene
SwissProt O01776 EMBL-EBI
WormBase CE36351 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54146 Hypothetical protein ZC581.9 [Caenorhabditis elegans] ref|NP_491915.2| ZC581.9 [Caenorhabditis elegans] 0.0
blast CAE67256 Hypothetical protein CBG12696 [Caenorhabditis briggsae] 0.0
blast T32878 hypothetical protein C17F3.2 - Caenorhabditis elegans 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182026_S_AT
caatgtcttctactaacttgccacgtgtaatgatcagcgctgcccgtccttcattctcat
ctgattcaagaaagatgtcattcctatcagcagatggaagactagaagatagaggaagta
gaagagaatcaagagattcacgtggaagtttggaaagtgatatgagtattcgaataggaa
atggttctgatatatcagatgattcatgtttttcaagtcattccgcaaaaggaagaagac
aaagttggttagatggatatggtcattcggttagcttagaacagaatacaaatggatttt
tggaaacaacttcaagaaaccttggtgatcggaatagtatgaatttcaaacagaggaatg
cgcgcgcctcagaaagacgagcccgaacccgatctccgaatgctgaactggatcctcaac
gtgaacaaccacctgctcgaccaaactcatttacaaatctcggccacaacattgttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTCTTCTACTAACTTGCCACG 343 183 1568 Antisense
CACGTGTAATGATCAGCGCTGCCCG 524 197 1589 Antisense
GTCCTTCATTCTCATCTGATTCAAG 431 477 1613 Antisense
CATGTTTTTCAAGTCATTCCGCAAA 383 209 1772 Antisense
GGATATGGTCATTCGGTTAGCTTAG 661 509 1822 Antisense
AAACAGAGGAATGCGCGCGCCTCAG 152 127 1915 Antisense
GCCTCAGAAAGACGAGCCCGAACCC 539 279 1933 Antisense
ACCCGATCTCCGAATGCTGAACTGG 682 89 1954 Antisense
GCTGAACTGGATCCTCAACGTGAAC 114 295 1969 Antisense
CTGCTCGACCAAACTCATTTACAAA 475 237 2000 Antisense
AATCTCGGCCACAACATTGTTCTCA 89 171 2023 Antisense
Sequence Source Affymetrix Proprietary Database