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[182025_at]

Description F13C5.6 /REP_DB=WormBase Gene ID /WP=CE27424 /TR=O76566 /GB=AAC64616.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 1176.2
(3)
P 		890
(0.4)
P 		641.5
(-1.8)
P 		503.1
(-3)
P 		673
B 1048.3
(3)
P 		744.2
(-0.3)
P 		592.8
(-1.9)
P 		494.1
(-3)
P 		554
C 1141.7
(3)
P 		820.6
(0.1)
P 		642.5
(-1.5)
P 		473.9
(-3)
P 		668
avr 1122.1
(3) 		818.3
(0.1) 		625.6
(-1.7) 		490.4
(-3) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 951.7
(3)
P 		921.3
(2.8)
P 		428.4
(-1.3)
P 		392.5
(-1.6)
P 		381.8
(-1.7)
P 		220
(-3)
P 		732
B 1085.8
(3)
P 		906.4
(1.7)
P 		653.5
(-0.1)
P 		483.9
(-1.3)
P 		423.8
(-1.8)
P 		255.5
(-3)
P 		830
C 941.8
(3)
P 		865.4
(2.4)
P 		589.7
(0)
P 		374.6
(-1.8)
P 		365.7
(-1.8)
P 		227.8
(-3)
P 		714
avr 993.1
(3) 		897.7
(2.2) 		557.2
(-0.4) 		417
(-1.6) 		390.4
(-1.8) 		234.4
(-3) 		759
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 428.3
(3)
P 		193.2
(-1)
P 		167.7
(-1.4)
P 		73.6
(-3)
P 		355
B 334.3
(3)
P 		183.8
(-0.9)
P 		137.4
(-2.2)
P 		105.3
(-3)
P 		229
C 377.9
(3)
P 		235.9
(0.1)
P 		223.9
(-0.1)
P 		79.9
(-3)
P 		298
avr 380.2
(3) 		204.3
(-0.6) 		176.3
(-1.2) 		86.3
(-3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 175.4
(-0.3)
P 		327.7
(3)
P 		93.3
(-2.1)
P 		99.5
(-2)
P 		115.2
(-1.7)
P 		53.6
(-3)
P 		274
B 377.8
(3)
P 		301.7
(1.4)
P 		158.7
(-1.7)
P 		128.2
(-2.3)
P 		172.2
(-1.4)
P 		95.3
(-3)
P 		283
C 349.1
(3)
P 		264
(1.1)
P 		150.1
(-1.4)
P 		75.3
(-3)
P 		118.3
(-2.1)
P 		76.3
(-3)
P 		274
avr 300.8
(3) 		297.8
(2.9) 		134
(-1.4) 		101
(-2.3) 		135.2
(-1.4) 		75.1
(-3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18227
Sequence Type Exemplar sequence
Representative Public ID F13C5.6 NCBI
Target Description F13C5.6 /REP_DB=WormBase Gene ID /WP=CE27424 /TR=O76566 /GB=AAC64616.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171939(10), NM_171612(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171939 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-10) (gei-10) mRNA, complete cds. 10/11 A 
NM_171612 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-10) (gei-10) mRNA, complete cds. 10/11 A 
SNAP00000042505 ENSEMBL cdna:SNAP chromosome:CEL140:X:611537:614793:-1 11/11 None
GENEFINDER00000042508 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:611537:620473:-1 11/11 None
F13C5.6b ENSEMBL cdna:known chromosome:CEL140:X:611132:621290:-1 gene:F13C5.6 10/11 A 
F13C5.6a ENSEMBL cdna:known chromosome:CEL140:X:611266:621278:-1 gene:F13C5.6 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:611536-614793(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27240 Gex interacting protein protein 10, isoform b [Caenorhabditis elegans] ref|NP_741704.1| GEX Interacting protein family member (gei-10) [Caenorhabditis elegans] 0.0
blast AAC64616 Gex interacting protein protein 10, isoform a [Caenorhabditis elegans] ref|NP_741703.1| GEX Interacting protein family member (gei-10) [Caenorhabditis elegans] 0.0
blast CAE63642 Hypothetical protein CBG08140 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182025_AT
acaacaacttctcactttctaggcttttgaaaaacgctccccttcctgaacgctacaaga
gcattacgacacgagaattccgccgagctccagagccatctgcaggaagcttctctgagc
aggacgactatgacttttctcactacacaactgcccgaccatattactcccgtccaaatc
gagatgatccagactattttgactttgacttgcagcactccgtggacatgttcaagagac
cagaaggaagatatattccaagaaagccacaagaatgggagaataaattgatcagtgaat
caactggaaaaggaaccgcaccactatccggacacatgttcacaaggccagataccgatt
ggagaaacaacaacacatcgtacttgagcgcggcactccgtactccgaaattctgggagc
aaagattcgaaaacatcgggaaacatgtgagagacagcaacccgattagtttggagagca
tcaacagaaatcgtccagtaacaagccgattcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAACTTCTCACTTTCTAGGCT 509 111 158 Antisense
TTACGACACGAGAATTCCGCCGAGC 622 681 221 Antisense
CAGAGCCATCTGCAGGAAGCTTCTC 127 205 248 Antisense
GAAGCTTCTCTGAGCAGGACGACTA 59 343 263 Antisense
ATGACTTTTCTCACTACACAACTGC 99 45 287 Antisense
CCATATTACTCCCGTCCAAATCGAG 209 271 316 Antisense
TTTTGACTTTGACTTGCAGCACTCC 2 677 354 Antisense
TGCAGCACTCCGTGGACATGTTCAA 145 579 368 Antisense
ATCCGGACACATGTTCACAAGGCCA 410 39 483 Antisense
CACTCCGTACTCCGAAATTCTGGGA 679 197 551 Antisense
GTCCAGTAACAAGCCGATTCACAGA 202 475 650 Antisense
Sequence Source Affymetrix Proprietary Database