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[182024_at]

Description F35C8.6 /REP_DB=WormBase Gene ID /WP=CE04498 /TR=Q20025 /GB=AAA81708.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 55      6grp_total > 84      4grp_total > 56      6grp_highest_sub > 04      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1006
1 2 3 4 range
A 820
(-3)
P 		1546.1
(1.7)
P 		1748.5
(3)
P 		899.8
(-2.5)
P 		929
B 847.8
(-3)
P 		1322.7
(-0)
P 		1816.4
(3)
P 		843
(-3)
P 		973
C 826.5
(-3)
P 		1347
(0.1)
P 		1825.6
(3)
P 		835.1
(-2.9)
P 		999
avr 831.4
(-3) 		1405.3
(0.6) 		1796.8
(3) 		859.3
(-2.8) 		965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1629
1 2 3 4 5 6 range
A 783.5
(-3)
P 		1224.9
(-1.3)
P 		1605.5
(0.2)
P 		2337.2
(3)
P 		1853.1
(1.1)
P 		1529
(-0.1)
P 		1554
B 877.6
(-3)
P 		1188.7
(-1.6)
P 		1290.2
(-1.2)
P 		2121.7
(2.5)
P 		2246.4
(3)
P 		1831.3
(1.2)
P 		1369
C 1057.6
(-3)
P 		1131.9
(-2.7)
P 		1576.3
(-0.7)
P 		2412.9
(3)
P 		2148.3
(1.8)
P 		1947.3
(0.9)
P 		1355
avr 906.2
(-3) 		1181.8
(-1.8) 		1490.7
(-0.5) 		2290.6
(3) 		2082.6
(2.1) 		1769.2
(0.7) 		1384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 298.6
(0.1)
P 		335.6
(0.8)
P 		457.1
(3)
P 		131.7
(-3)
P 		325
B 270.3
(-0.7)
P 		326.7
(0.7)
P 		420.9
(3)
P 		179.6
(-3)
P 		241
C 273.6
(-1.4)
P 		387.3
(-0)
P 		636.3
(3)
P 		140.8
(-3)
P 		496
avr 280.8
(-0.8) 		349.9
(0.4) 		504.8
(3) 		150.7
(-3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 768
1 2 3 4 5 6 range
A 144.4
(-3)
P 		435.6
(0.9)
P 		349.6
(-0.3)
P 		592.8
(3)
P 		559.2
(2.6)
P 		372.3
(0)
P 		448
B 305.4
(-3)
P 		395.7
(-2.1)
P 		313.3
(-2.9)
P 		562
(-0.5)
P 		912.7
(3)
P 		682.9
(0.7)
P 		607
C 392
(-2.2)
P 		345.4
(-3)
P 		401.2
(-2)
P 		485.2
(-0.6)
P 		695.2
(3)
P 		651.9
(2.3)
P 		350
avr 280.6
(-3) 		392.2
(-1.5) 		354.7
(-2) 		546.7
(0.6) 		722.4
(3) 		569
(0.9) 		442
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16256
Sequence Type Exemplar sequence
Representative Public ID F35C8.6 NCBI
Target Description F35C8.6 /REP_DB=WormBase Gene ID /WP=CE04498 /TR=Q20025 /GB=AAA81708.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076509 NCBI Caenorhabditis elegans ProFiliN family member (pfn-2) (pfn-2) mRNA, complete cds. 11/11 None
GENEFINDER00000043847 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5353120:5354019:-1 11/11 None
SNAP00000043827 ENSEMBL cdna:SNAP chromosome:CEL140:X:5353492:5354019:-1 10/11 None
F35C8.6 ENSEMBL cdna:known chromosome:CEL140:X:5353067:5354133:-1 gene:F35C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5353120-5354134(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pfn-2
Ensembl F35C8.6
Entrez Gene 180808 Entrez gene
WormBase CE39098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508910 ProFiliN family member (pfn-2) [Caenorhabditis elegans] 3.0E-93
blast AAA81708 Profilin protein 2 [Caenorhabditis elegans] sp|Q20025|PROF2_CAEEL Profilin-2 gb|AAT01434.1| profilin-2 [Caenorhabditis elegans] 7.0E-69
blast NP_508910 ProFiliN family member (pfn-2) [Caenorhabditis elegans] 7.0E-69
blast AAA81708 Profilin protein 2 [Caenorhabditis elegans] sp|Q20025|PROF2_CAEEL Profilin-2 gb|AAT01434.1| profilin-2 [Caenorhabditis elegans] 1.0E-68
blast AAA81708 Profilin protein 2 [Caenorhabditis elegans] sp|Q20025|PROF2_CAEEL Profilin-2 gb|AAT01434.1| profilin-2 [Caenorhabditis elegans] 9.0E-67
blast NP_508910 ProFiliN family member (pfn-2) [Caenorhabditis elegans] 9.0E-67
blast CAE60703 Hypothetical protein CBG04366 [Caenorhabditis briggsae] 1.0E-40
blast CAE60703 Hypothetical protein CBG04366 [Caenorhabditis briggsae] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002097 EMBL-EBI Profilin/allergen 1.4E-20
Pfam IPR002097 EMBL-EBI Profilin/allergen 1.4E-20
Sequence
Target Sequence 
>C. ELEGANS:182024_AT
ccgctatcatcggatccgacgggtcggtttgggctagaagtggggatgccaacgctttcc
gggctactgaggtagagctcaaacgttttgctgctctgttcaacgacatcaattcggtgc
ctggaaccggcgctgatttggaagaaattcactacattgttccccgcgtcgaggagaagc
tcatctttggaaagaaggagcaaaccggatttttcgctgccaagacaaaccaagctattg
tgattgcaatgtacgagggagacaacgctcaatcggcttcagtccgtgccggcgtcgaat
acattgcccagtacctggccagctctgatttggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCTATCATCGGATCCGACGGGTC 191 261 188 Antisense
GACGGGTCGGTTTGGGCTAGAAGTG 352 357 205 Antisense
AGAAGTGGGGATGCCAACGCTTTCC 392 73 223 Antisense
GCTTTCCGGGCTACTGAGGTAGAGC 563 303 241 Antisense
CTCAAACGTTTTGCTGCTCTGTTCA 95 229 265 Antisense
AACGACATCAATTCGGTGCCTGGAA 290 143 289 Antisense
TGCCTGGAACCGGCGCTGATTTGGA 58 587 305 Antisense
AGAAATTCACTACATTGTTCCCCGC 364 67 330 Antisense
GAGCAAACCGGATTTTTCGCTGCCA 476 389 385 Antisense
TGCCGGCGTCGAATACATTGCCCAG 611 585 474 Antisense
TACCTGGCCAGCTCTGATTTGGAAG 304 647 499 Antisense
Sequence Source Affymetrix Proprietary Database