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[182022_at]

Description F41C6.2 /REP_DB=WormBase Gene ID /WP=CE04539 /TR=Q20267 /GB=AAA80443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 1.6
(-2.4)
A 		4.9
(3)
A 		1.2
(-3)
A 		4.2
(1.9)
A 		4
B 3.7
(3)
A 		2.4
(-3)
A 		2.5
(-2.5)
A 		2.8
(-1.2)
A 		1
C 1.3
(-3)
A 		4
(-2.8)
A 		1.6
(-3)
A 		75.7
(3)
A 		74
avr 2.2
(-2.9) 		3.8
(-2.5) 		1.8
(-3) 		27.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-2.8)
A 		1.8
(-2.8)
A 		24.2
(3)
A 		1.2
(-3)
A 		1.9
(-2.8)
A 		2.4
(-2.7)
A 		23
B 1.2
(-1.6)
A 		0.8
(-3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		2.1
(1.6)
A 		2.5
(3)
A 		2
C 1
(-3)
A 		2.3
(0.3)
A 		3.3
(2.8)
A 		3.4
(3)
A 		1.4
(-2)
A 		1
(-3)
A 		2
avr 1.3
(-3) 		1.6
(-2.8) 		9.5
(3) 		1.9
(-2.6) 		1.8
(-2.6) 		2
(-2.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.6
(-0.8)
A 		1.1
(3)
A 		0.3
(-3)
A 		0.6
(-0.8)
A 		1
B 1.2
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
C 0.4
(-3)
A 		1.2
(-2.6)
A 		0.6
(-2.9)
A 		12.8
(3)
A 		12
avr 0.7
(-2.7) 		1
(-2.3) 		0.5
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.7
(-2.5)
A 		5.3
(3)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		0.6
(-2.6)
A 		5
B 0.4
(-2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.8
(2)
A 		0.9
(3)
A 		1
C 0.4
(-1.8)
A 		0.7
(1.8)
A 		0.8
(3)
A 		0.7
(1.8)
A 		0.4
(-1.8)
A 		0.3
(-3)
A 		1
avr 0.4
(-3) 		0.6
(-2.3) 		2.1
(3) 		0.4
(-3) 		0.6
(-2.3) 		0.6
(-2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16960
Sequence Type Exemplar sequence
Representative Public ID F41C6.2 NCBI
Target Description F41C6.2 /REP_DB=WormBase Gene ID /WP=CE04539 /TR=Q20267 /GB=AAA80443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076758 NCBI Caenorhabditis elegans F41C6.2 (F41C6.2) mRNA, complete cds. 11/11 A 
F41C6.2 ENSEMBL cdna:known chromosome:CEL140:X:6870306:6871622:1 gene:F41C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6870305-6871622(+) 100.0 100.0
chrX:6870517-6871834(-) 95.76 95.76
Public Domain and Genome References
Gene Title
Ensembl F41C6.2
Entrez Gene 185597 Entrez gene
SwissProt Q20267 EMBL-EBI
WormBase CE04539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80443 Hypothetical protein F41C6.2 [Caenorhabditis elegans] ref|NP_509159.1| F41C6.2 [Caenorhabditis elegans] 7.0E-90
blast CAA98535 Hypothetical protein T11F9.13 [Caenorhabditis elegans] ref|NP_505912.1| T11F9.13 [Caenorhabditis elegans] 2.0E-57
blast AAA80444 Hypothetical protein F41C6.3 [Caenorhabditis elegans] ref|NP_509160.1| F41C6.3 [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:182022_AT
atgaatagcgccggaattccactccgttcctgtctaaccatctacataaactgcagcgat
tgcttcgtaaacttgcgcaactcatacgtaatctgcgtcgtcgatagcgtgagaagaaaa
aaggttgaaccggatgtcatgaaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATAGCGCCGGAATTCCACTCC 34 45 13 Antisense
CGTTCCTGTCTAACCATCTACATAA 276 247 37 Antisense
TAACCATCTACATAAACTGCAGCGA 244 637 47 Antisense
AAACTGCAGCGATTGCTTCGTAAAC 325 127 60 Antisense
AGCGATTGCTTCGTAAACTTGCGCA 70 83 67 Antisense
GCTTCGTAAACTTGCGCAACTCATA 253 305 74 Antisense
ACTTGCGCAACTCATACGTAATCTG 302 103 83 Antisense
ACTCATACGTAATCTGCGTCGTCGA 1 101 92 Antisense
GTAATCTGCGTCGTCGATAGCGTGA 78 463 100 Antisense
CTGCGTCGTCGATAGCGTGAGAAGA 510 235 105 Antisense
GGTTGAACCGGATGTCATGAAAATC 543 507 135 Antisense
Sequence Source Affymetrix Proprietary Database