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[182021_at]

Description DY3.1 /REP_DB=WormBase Gene ID /WP=CE15745 /TR=SW:O45319 /GB=CAB09410.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 24      6grp_total > 20      4grp_total > 40      6grp_highest_sub > 03      6grp_cgc > 73      6grp_high1_sub > 02_03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2606
1 2 3 4 range
A 2799.5
(-3)
P 		4849.4
(2.1)
P 		5196.4
(3)
P 		3910.2
(-0.2)
P 		2397
B 2928.7
(-3)
P 		4065.2
(-0.2)
P 		5405.2
(3)
P 		3423.9
(-1.8)
P 		2477
C 2864.2
(-3)
P 		4214.2
(2.5)
P 		4329
(3)
P 		4179.8
(2.4)
P 		1465
avr 2864.1
(-3) 		4376.3
(1.3) 		4976.9
(3) 		3838
(-0.2) 		2113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3400
1 2 3 4 5 6 range
A 2250.2
(-1.8)
P 		2683.5
(-1)
P 		4943.3
(3)
P 		3149.2
(-0.2)
P 		2197.8
(-1.8)
P 		1543.4
(-3)
P 		3400
B 2564.2
(-1.5)
P 		3793.9
(2.1)
P 		4092.6
(3)
P 		2935.3
(-0.4)
P 		3127
(0.2)
P 		2055.8
(-3)
P 		2037
C 1928.4
(-3)
P 		3882.1
(3)
P 		2454.7
(-1.4)
P 		3354.2
(1.4)
P 		2119.4
(-2.4)
P 		2535.1
(-1.1)
P 		1954
avr 2247.6
(-2.3) 		3453.2
(1.7) 		3830.2
(3) 		3146.2
(0.7) 		2481.4
(-1.5) 		2044.8
(-3) 		1785
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 936
1 2 3 4 range
A 1019.3
(0.4)
P 		1052.7
(0.7)
P 		1358.4
(3)
P 		572.4
(-3)
P 		786
B 933.9
(-0.7)
P 		1004
(0.1)
P 		1252.5
(3)
P 		729.6
(-3)
P 		523
C 948.1
(-1.2)
P 		1211.6
(0.8)
P 		1508.8
(3)
P 		704.8
(-3)
P 		804
avr 967.1
(-0.5) 		1089.4
(0.6) 		1373.2
(3) 		668.9
(-3) 		704

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 895
1 2 3 4 5 6 range
A 414.8
(-2.7)
P 		954.4
(2)
P 		1076.6
(3)
P 		798.7
(0.6)
P 		663.2
(-0.5)
P 		375.8
(-3)
P 		701
B 892.2
(-1.5)
P 		1262.8
(2.9)
P 		993.8
(-0.3)
P 		777.5
(-2.9)
P 		1270.4
(3)
P 		766.6
(-3)
P 		504
C 714.8
(-2)
P 		1184.5
(3)
P 		624.8
(-3)
P 		674.5
(-2.5)
P 		685.8
(-2.3)
P 		848.6
(-0.6)
P 		560
avr 673.9
(-2.9) 		1133.9
(3) 		898.4
(-0) 		750.2
(-1.9) 		873.1
(-0.3) 		663.7
(-3) 		470
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.688
Sequence Type Exemplar sequence
Representative Public ID DY3.1 NCBI
Target Description DY3.1 /REP_DB=WormBase Gene ID /WP=CE15745 /TR=SW:O45319 /GB=CAB09410.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059969 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-13) (tin-13) mRNA, complete cds. 11/11 None
SNAP00000022832 ENSEMBL cdna:SNAP chromosome:CEL140:I:8767422:8767904:-1 11/11 None
GENEFINDER00000022852 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8767422:8767904:-1 11/11 None
DY3.1 ENSEMBL cdna:known chromosome:CEL140:I:8767329:8767915:-1 gene:DY3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8767352-8767835(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tin-13
Ensembl DY3.1
Entrez Gene 172686 Entrez gene
SwissProt O45319 EMBL-EBI
WormBase CE15745 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6626 protein targeting to mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB09410 Hypothetical protein DY3.1 [Caenorhabditis elegans] ref|NP_492370.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-13) [Caenorhabditis elegans] gb|AAD39955.1| small zinc finger-like protein [Caenorhabditis elegans] sp|O45319|TIM13_CAEEL Mitochondrial import inner membrane translocase subunit Tim13 6.0E-39
blast CAE66967 Hypothetical protein CBG12362 [Caenorhabditis briggsae] 1.0E-37
blast Q9Y193 Mitochondrial import inner membrane translocase subunit Tim13 gb|AAD39956.1| small zinc finger-like protein [Brugia malayi] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 5.1E-32
Sequence
Target Sequence 
>C. ELEGANS:182021_AT
ggatcagctgcttgatgtggagacgttgaagaagctgtcaccagaacagcaagagcaagt
gatcagtggtgtcaagcagcaagctgcccttgccaatgcccagaatcttgtcacggacat
ttctgaaaagtgcacgaataaatgcatcactgcaccaggaagctcattggccagtggtga
aaagcaatgtctacagcgatgcatggatcgtttcatggaatcatggaatcttgtttctca
aactcttcaaaaacgtcttcaagaagaaatggcgtcttcaggaggaatgggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCAGCTGCTTGATGTGGAGACG 540 511 15 Antisense
GCAAGAGCAAGTGATCAGTGGTGTC 507 321 63 Antisense
GATCAGTGGTGTCAAGCAGCAAGCT 312 419 75 Antisense
CAAGCAGCAAGCTGCCCTTGCCAAT 606 183 87 Antisense
TTGCCAATGCCCAGAATCTTGTCAC 343 701 104 Antisense
GAATCTTGTCACGGACATTTCTGAA 199 329 117 Antisense
ATCACTGCACCAGGAAGCTCATTGG 185 29 160 Antisense
GGAAGCTCATTGGCCAGTGGTGAAA 121 531 172 Antisense
AGCAATGTCTACAGCGATGCATGGA 630 75 197 Antisense
GAATCTTGTTTCTCAAACTCTTCAA 393 327 240 Antisense
AATGGCGTCTTCAGGAGGAATGGGT 296 159 282 Antisense
Sequence Source Affymetrix Proprietary Database