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[182019_at]

Description W03D2.9 /REP_DB=WormBase Gene ID /WP=CE14522 /TR=O02122 /GB=AAC48253.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 9.5
(-3)
A 		177.3
(3)
P 		68.9
(-0.9)
A 		92.5
(-0)
A 		168
B 5.5
(-3)
A 		207
(3)
P 		65.7
(-1.2)
P 		54.2
(-1.5)
A 		202
C 11.5
(-3)
A 		177.3
(3)
P 		72.9
(-0.8)
P 		70.7
(-0.9)
A 		166
avr 8.8
(-3) 		187.2
(3) 		69.2
(-1) 		72.5
(-0.9) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1199
1 2 3 4 5 6 range
A 51.8
(-3)
A 		233.2
(-2.1)
P 		77.6
(-2.9)
P 		1229.4
(3)
P 		1037.3
(2)
P 		251.8
(-2)
P 		1178
B 51.2
(-3)
A 		240.7
(-2.1)
P 		106.8
(-2.7)
P 		786
(0.7)
P 		1249.7
(3)
P 		287.6
(-1.8)
P 		1199
C 50.3
(-3)
A 		236.8
(-1.9)
P 		126.4
(-2.6)
P 		1109.7
(3)
P 		1077.8
(2.8)
P 		313.7
(-1.5)
P 		1059
avr 51.1
(-3) 		236.9
(-2) 		103.6
(-2.7) 		1041.7
(2.6) 		1121.6
(3) 		284.4
(-1.7) 		1071
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 3.5
(-3)
A 		38.5
(3)
P 		18
(-0.5)
A 		13.5
(-1.3)
A 		35
B 1.7
(-3)
A 		51.1
(3)
P 		15.2
(-1.4)
P 		11.5
(-1.8)
A 		49
C 3.8
(-3)
A 		51
(3)
P 		25.4
(-0.3)
P 		11.9
(-2)
A 		47
avr 3
(-3) 		46.9
(3) 		19.5
(-0.7) 		12.3
(-1.7) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 9.5
(-3)
A 		82.9
(-1.5)
P 		16.9
(-2.9)
P 		311.8
(3)
P 		313
(3)
P 		61.3
(-2)
P 		304
B 17.8
(-3)
A 		80.1
(-2.2)
P 		25.9
(-2.9)
P 		208.2
(-0.7)
P 		507.7
(3)
P 		107.3
(-1.9)
P 		490
C 18.7
(-3)
A 		72.3
(-2)
P 		32.2
(-2.8)
P 		223.2
(0.7)
P 		348.8
(3)
P 		105
(-1.4)
P 		330
avr 15.3
(-3) 		78.4
(-2) 		25
(-2.8) 		247.7
(0.7) 		389.8
(3) 		91.2
(-1.8) 		375
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10525
Sequence Type Exemplar sequence
Representative Public ID W03D2.9 NCBI
Target Description W03D2.9 /REP_DB=WormBase Gene ID /WP=CE14522 /TR=O02122 /GB=AAC48253.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068074 NCBI Caenorhabditis elegans W03D2.9 (W03D2.9) mRNA, complete cds. 11/11 None
SNAP00000027044 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4073463:4074687:-1 11/11 None
GENEFINDER00000027050 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4073296:4074687:-1 11/11 None
W03D2.9 ENSEMBL cdna:known chromosome:CEL140:IV:4073463:4074687:-1 gene:W03D2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4073468-4074693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D2.9
Entrez Gene 189154 Entrez gene
SwissProt O02122 EMBL-EBI
WormBase CE14522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48253 Hypothetical protein W03D2.9 [Caenorhabditis elegans] ref|NP_500475.1| W03D2.9 [Caenorhabditis elegans] 3.0E-66
blast CAE73892 Hypothetical protein CBG21492 [Caenorhabditis briggsae] 1.0E-32
blast CAE64532 Hypothetical protein CBG09274 [Caenorhabditis briggsae] 2.0E-22
blast CAE64532 Hypothetical protein CBG09274 [Caenorhabditis briggsae] 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:182019_AT
atgactgcgtgtttgtggattctcttagttttaacattatcatcaaagttttgtgatgcg
gcttttcgatatgaaaaccgaactctaacatgtcacgtggaaaatggagttgacacgtgt
ttcctgacagctccggatacaaaattgcaaaacctcgacttgaatattaatagcctgtgc
cgtagggagccaactgatgaaaatagtgggaataagaagcgcattgtgtgcccaataaga
tgtccgaaggactatgaggttcacgtgctcaacaaaatcccgtcatcaaacagaaaatgc
accaagtactacaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTGCGTGTTTGTGGATTCTCT 505 45 13 Antisense
AGTTTTGTGATGCGGCTTTTCGATA 379 63 59 Antisense
AACCGAACTCTAACATGTCACGTGG 479 145 88 Antisense
GGAGTTGACACGTGTTTCCTGACAG 335 517 118 Antisense
GTTTCCTGACAGCTCCGGATACAAA 562 449 131 Antisense
CTGTGCCGTAGGGAGCCAACTGATG 445 239 187 Antisense
TAAGAAGCGCATTGTGTGCCCAATA 708 637 225 Antisense
GTGTGCCCAATAAGATGTCCGAAGG 326 487 238 Antisense
GGACTATGAGGTTCACGTGCTCAAC 248 525 261 Antisense
TGCTCAACAAAATCCCGTCATCAAA 295 579 278 Antisense
GAAAATGCACCAAGTACTACACCTA 663 353 305 Antisense
Sequence Source Affymetrix Proprietary Database