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[182017_at]

Description Y39A1C.4 /REP_DB=WormBase Gene ID /WP=CE19149 /TR=Q9XXE8 /GB=CAA19506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 31.9
(-0.2)
M 		17.5
(-1.8)
A 		6.4
(-3)
A 		62
(3)
A 		56
B 46
(1.4)
P 		11.7
(-2.3)
A 		5.7
(-3)
A 		60.3
(3)
A 		55
C 26.3
(-2.9)
P 		48.6
(-0.5)
A 		25.3
(-3)
A 		81.3
(3)
P 		56
avr 34.7
(-0.6) 		25.9
(-1.5) 		12.5
(-3) 		67.9
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 56.3
(3)
P 		32.6
(-0.7)
A 		49.8
(2)
P 		33.1
(-0.6)
A 		17.9
(-3)
A 		52.4
(2.4)
A 		38
B 7.7
(-2.4)
A 		7.5
(-2.5)
A 		30.1
(-0.2)
A 		2.1
(-3)
A 		18.6
(-1.3)
A 		61.6
(3)
P 		60
C 40.7
(0.6)
A 		26.6
(-3)
A 		34.2
(-1.1)
A 		34.4
(-1)
A 		50
(3)
A 		43.8
(1.4)
A 		23
avr 34.9
(-0.5) 		22.2
(-3) 		38
(0.1) 		23.2
(-2.8) 		28.8
(-1.7) 		52.6
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.6
(3)
M 		3.8
(-1.7)
A 		1.7
(-3)
A 		9.1
(1.5)
A 		10
B 14.7
(3)
P 		2.9
(-2.3)
A 		1.3
(-3)
A 		12.9
(2.2)
A 		13
C 8.7
(-3)
P 		14
(3)
A 		8.8
(-2.9)
A 		13.7
(2.7)
P 		5
avr 11.7
(2.9) 		6.9
(-0.8) 		3.9
(-3) 		11.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.4
(1.1)
P 		11.6
(2)
A 		10.9
(1.5)
P 		8.4
(-0.6)
A 		5.4
(-3)
A 		12.8
(3)
A 		7
B 2.7
(-2.4)
A 		2.5
(-2.5)
A 		7.3
(-1.2)
A 		0.6
(-3)
A 		7.6
(-1.1)
A 		23
(3)
P 		22
C 15.1
(2.3)
A 		8.1
(-2.2)
A 		8.7
(-1.8)
A 		6.9
(-3)
A 		16.2
(3)
A 		14.7
(2)
A 		9
avr 9.4
(-0.9) 		7.4
(-1.9) 		9
(-1.1) 		5.3
(-3) 		9.7
(-0.7) 		16.8
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7800
Sequence Type Exemplar sequence
Representative Public ID Y39A1C.4 NCBI
Target Description Y39A1C.4 /REP_DB=WormBase Gene ID /WP=CE19149 /TR=Q9XXE8 /GB=CAA19506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066989 NCBI Caenorhabditis elegans Y39A1C.4 (Y39A1C.4) mRNA, complete cds. 11/11 None
SNAP00000042752 ENSEMBL cdna:SNAP chromosome:CEL140:III:10850247:10856829:1 10/11 None
GENEFINDER00000042759 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10850462:10854466:1 11/11 None
Y39A1C.4 ENSEMBL cdna:known chromosome:CEL140:III:10849130:10854466:1 gene:Y39A1C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10850457-10854462(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1C.4
Entrez Gene 189716 Entrez gene
SwissProt Q9XXE8 EMBL-EBI
WormBase CE37801 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4563 beta-N-acetylhexosaminidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAI06053 Hypothetical protein Y39A1C.4 [Caenorhabditis elegans] emb|CAA19506.2| Hypothetical protein Y39A1C.4 [Caenorhabditis elegans] ref|NP_499390.2| Y39A1C.4 [Caenorhabditis elegans] 0.0
blast CAE71393 Hypothetical protein CBG18300 [Caenorhabditis briggsae] 0.0
blast AAA96105 Hypothetical protein C14C11.3 [Caenorhabditis elegans] ref|NP_504489.3| C14C11.3 [Caenorhabditis elegans] 9.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499390.2 1 12-34
Y39A1C.4 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:182017_AT
gtacttgccgaaacaattcccgtagcccttccgacacttgcaatgagtatggaaacaatg
attgaaggacgtccacttgctggaaattatcctgtaacttcggaacttttacaatgtaca
ccacctcttgatttgggatttactgccactggatgcaaatttccggggaatcgaatctat
gaattgattaatgaaatgtatcaaaaacaaatgcaattgagaacatatcgactggatgat
tatgagcttaatggatggttatccagagttgctgatgattattccgtttctagtcattgg
tatattgataaaatcgagaatatgatcgaaatgcacgctactccactggaacaattagcc
gacgatctccgcttcgaaatggagagaatctttttcaaggacactgtcgatgagttcata
ttcacatatttaggcgaagatcttgaatggttcaataggaaacaatttaaaagagctccc
gattcgggaaattttgaaaaaaaacataaaaattttgaatttaggggcgtggcttgttgg
actc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGCCGAAACAATTCCCGTAG 256 459 664 Antisense
GATTGAAGGACGTCCACTTGCTGGA 245 435 723 Antisense
TTACAATGTACACCACCTCTTGATT 108 685 772 Antisense
GATTTGGGATTTACTGCCACTGGAT 657 427 793 Antisense
GCCACTGGATGCAAATTTCCGGGGA 407 279 808 Antisense
GAGTTGCTGATGATTATTCCGTTTC 17 399 929 Antisense
TATTCCGTTTCTAGTCATTGGTATA 123 665 943 Antisense
ATGATCGAAATGCACGCTACTCCAC 267 47 985 Antisense
GGAACAATTAGCCGACGATCTCCGC 600 527 1011 Antisense
GAATCTTTTTCAAGGACACTGTCGA 237 329 1049 Antisense
TTTAGGGGCGTGGCTTGTTGGACTC 214 673 1183 Antisense
Sequence Source Affymetrix Proprietary Database