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[182014_s_at]

Description F27C1.6 /REP_DB=WormBase Gene ID /WP=CE09718 /TR=P91280 /GB=AAB37651.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 589.1
(3)
P 		340.4
(-1.5)
P 		258.2
(-3)
P 		392.8
(-0.6)
P 		331
B 522.7
(3)
P 		322.4
(-1.9)
P 		277.3
(-3)
P 		307.5
(-2.3)
P 		245
C 667.3
(3)
P 		417.8
(-1.6)
P 		341.9
(-3)
P 		385.6
(-2.2)
P 		325
avr 593
(3) 		360.2
(-1.6) 		292.5
(-3) 		362
(-1.6) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 319.5
(1.4)
P 		343.9
(3)
P 		274.9
(-1.5)
P 		299.2
(0.1)
P 		252.7
(-3)
P 		317
(1.2)
P 		91
B 427.6
(1)
P 		291.8
(-1.9)
P 		290.7
(-2)
P 		242.8
(-3)
P 		264.1
(-2.5)
P 		516.6
(3)
P 		274
C 272.4
(-2)
P 		387.9
(-0.3)
P 		330.6
(-1.1)
P 		270.2
(-2)
P 		197.5
(-3)
P 		626.3
(3)
P 		429
avr 339.8
(-0.5) 		341.2
(-0.5) 		298.7
(-1.5) 		270.7
(-2.2) 		238.1
(-3) 		486.6
(3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 214.5
(3)
P 		73.9
(-2.4)
P 		67.5
(-2.6)
P 		57.5
(-3)
P 		157
B 166.7
(3)
P 		79.6
(-2.1)
P 		64.3
(-3)
P 		65.5
(-2.9)
P 		102
C 220.9
(3)
P 		120.1
(-0.9)
P 		119.1
(-0.9)
P 		65
(-3)
P 		156
avr 200.7
(3) 		91.2
(-1.8) 		83.6
(-2.1) 		62.7
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 58.9
(-3)
P 		122.3
(3)
P 		59.9
(-2.9)
P 		75.9
(-1.4)
P 		76.2
(-1.4)
P 		77.2
(-1.3)
P 		63
B 148.8
(1)
P 		97.1
(-1.5)
P 		70.6
(-2.7)
P 		64.3
(-3)
P 		107.3
(-1)
P 		192.6
(3)
P 		128
C 101
(-1.2)
P 		118.4
(-0.5)
P 		84.1
(-1.8)
P 		54.3
(-3)
P 		63.9
(-2.6)
P 		209.7
(3)
P 		155
avr 102.9
(-0.6) 		112.6
(0) 		71.5
(-2.6) 		64.8
(-3) 		82.5
(-1.9) 		159.8
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1109
Sequence Type Exemplar sequence
Representative Public ID F27C1.6 NCBI
Target Description F27C1.6 /REP_DB=WormBase Gene ID /WP=CE09718 /TR=P91280 /GB=AAB37651.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059189 NCBI Caenorhabditis elegans F27C1.6 (F27C1.6) mRNA, complete cds. 11/11 None
SNAP00000014501 ENSEMBL cdna:SNAP chromosome:CEL140:I:5424962:5428443:-1 10/11 None
GENEFINDER00000014524 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5425165:5426095:-1 10/11 None
F27C1.6.1 ENSEMBL cdna:known chromosome:CEL140:I:5421317:5428451:-1 gene:F27C1.6 11/11 None
F27C1.6.2 ENSEMBL cdna:known chromosome:CEL140:I:5421322:5428460:-1 gene:F27C1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5421510-5428443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.6
Entrez Gene 172192 Entrez gene
SwissProt P91280 EMBL-EBI
WormBase CE09718 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430B:1438579_AT UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast) mm
MOUSE430_2:1438579_AT UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast) mm
MU19KSUBC:TC39557_AT Acyl-CoA synthetase long-chain family member 3, mRNA (cDNA clone MGC:28272 IMAGE:4009004) mm
MU19KSUBC:TC41866_AT Acyl-CoA synthetase long-chain family member 3, mRNA (cDNA clone MGC:28272 IMAGE:4009004) mm
Protein Similarities
Method ID Description E-Value
blast AAB37651 Hypothetical protein F27C1.6 [Caenorhabditis elegans] ref|NP_491590.1| F27C1.6 [Caenorhabditis elegans] 0.0
blast CAE66922 Hypothetical protein CBG12310 [Caenorhabditis briggsae] 0.0
blast AAB37651 Hypothetical protein F27C1.6 [Caenorhabditis elegans] ref|NP_491590.1| F27C1.6 [Caenorhabditis elegans] 1.0E-127
blast CAE66922 Hypothetical protein CBG12310 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR006709 EMBL-EBI Utp14 protein 1.0E-126
Pfam IPR006709 EMBL-EBI Utp14 protein 1.0E-126
Pfam IPR006709 EMBL-EBI Utp14 protein 1.3E-117
Sequence
Target Sequence 
>C. ELEGANS:182014_S_AT
ggattcagctggagtgcatgccgctgaaaaacgacaaaaggaaattgaaatcgatccgag
caaatttctagagctcaacacaaacgacttgacacaagtttcgtcggattttgttgagaa
aatggatcagtttgatgaagaagccgctcaagttatcaatgaagctttcaaggatgatga
cgtcattggagattttgaagatatgaaagaaggagtgaaagaaaaggaaaaagttaaaga
tgtagatctcaatttggccggatggggctcatgggttggaccaggaatgactgagaagaa
gcgacgccaaaactttgtgattaaagcaaaagagaagagaagaagggacggagagagaaa
cggagtaattattgctgaaaatatgacggctaaggatggtatcggaaagatccagccacg
ttctctaccattcccctactcccgagttgaagactatgaggctgtgctaaaacaaccgtt
gggtcttgaatggaatatggagaagatgcgagatgagttgtgcaaacctgcggttgttgt
tgaggctggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCAGCTGGAGTGCATGCCGCT 570 509 1362 Antisense
GACTTGACACAAGTTTCGTCGGATT 525 371 1447 Antisense
GAAGAAGCCGCTCAAGTTATCAATG 628 339 1498 Antisense
CAATTTGGCCGGATGGGGCTCATGG 350 173 1611 Antisense
GGGGCTCATGGGTTGGACCAGGAAT 552 497 1625 Antisense
GAAGCGACGCCAAAACTTTGTGATT 392 343 1659 Antisense
GTATCGGAAAGATCCAGCCACGTTC 666 453 1760 Antisense
TTCCCCTACTCCCGAGTTGAAGACT 4 697 1792 Antisense
GAGGCTGTGCTAAAACAACCGTTGG 311 401 1819 Antisense
GATGAGTTGTGCAAACCTGCGGTTG 149 411 1873 Antisense
CTGCGGTTGTTGTTGAGGCTGGAAG 62 237 1889 Antisense
Sequence Source Affymetrix Proprietary Database