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[182013_at]

Description Y9C2UA.2 /REP_DB=WormBase Gene ID /WP=CE21341 /TR=Q9XXT9 /GB=CAA15518.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 6.1
(-3)
A 		36.5
(-0.7)
A 		24.4
(-1.6)
A 		86.5
(3)
A 		80
B 4.6
(-3)
A 		59.2
(3)
A 		4.4
(-3)
A 		47.8
(1.8)
A 		55
C 14.5
(-3)
A 		35.7
(-1.2)
A 		13.9
(-3)
A 		85.9
(3)
A 		72
avr 8.4
(-3) 		43.8
(0.3) 		14.2
(-2.5) 		73.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 74.8
(-1.2)
A 		24.4
(-3)
A 		37.8
(-2.5)
A 		192.8
(3)
P 		138.1
(1.1)
A 		66.6
(-1.5)
A 		168
B 28.8
(-2.5)
A 		15.8
(-3)
A 		25.9
(-2.6)
A 		124.7
(1.3)
A 		168.1
(3)
P 		57.8
(-1.3)
A 		152
C 13.4
(-3)
A 		21.2
(-2.7)
A 		47.3
(-1.7)
A 		169.9
(3)
A 		143.3
(2)
A 		26.9
(-2.5)
A 		157
avr 39
(-2.2) 		20.5
(-3) 		37
(-2.3) 		162.5
(3) 		149.8
(2.5) 		50.4
(-1.7) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.2
(-3)
A 		7.9
(0.3)
A 		6.4
(-0.6)
A 		12.7
(3)
A 		11
B 1.5
(-2.8)
A 		14.6
(3)
A 		1
(-3)
A 		10.2
(1.1)
A 		14
C 4.8
(-3)
A 		10.3
(0.4)
A 		4.9
(-2.9)
A 		14.5
(3)
A 		10
avr 2.8
(-3) 		10.9
(2) 		4.1
(-2.2) 		12.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 13.8
(-2.2)
A 		8.7
(-2.9)
A 		8.2
(-3)
A 		48.9
(3)
P 		41.7
(1.9)
A 		16.2
(-1.8)
A 		41
B 10
(-2.6)
A 		5.3
(-3)
A 		6.3
(-2.9)
A 		33
(-0.4)
A 		68.3
(3)
P 		21.6
(-1.4)
A 		63
C 5
(-3)
A 		6.5
(-2.8)
A 		12
(-2)
A 		34.2
(1.2)
A 		46.4
(3)
A 		9
(-2.4)
A 		41
avr 9.6
(-2.6) 		6.8
(-3) 		8.8
(-2.7) 		38.7
(1.2) 		52.1
(3) 		15.6
(-1.8) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3193
Sequence Type Exemplar sequence
Representative Public ID Y9C2UA.2 NCBI
Target Description Y9C2UA.2 /REP_DB=WormBase Gene ID /WP=CE21341 /TR=Q9XXT9 /GB=CAA15518.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063549 NCBI Caenorhabditis elegans Y9C2UA.2 (Y9C2UA.2) mRNA, complete cds. 11/11 None
SNAP00000006405 ENSEMBL cdna:SNAP chromosome:CEL140:II:9146170:9146805:1 11/11 None
GENEFINDER00000006414 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9146170:9146539:1 11/11 None
Y9C2UA.2 ENSEMBL cdna:known chromosome:CEL140:II:9146170:9146550:1 gene:Y9C2UA.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9146166-9146547(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C2UA.2
Entrez Gene 3565617 Entrez gene
SwissProt Q9XXT9 EMBL-EBI
WormBase CE21341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15518 Hypothetical protein Y9C2UA.2 [Caenorhabditis elegans] ref|NP_495950.1| Y9C2UA.2 [Caenorhabditis elegans] 2.0E-41
blast CAA15518 Hypothetical protein Y9C2UA.2 [Caenorhabditis elegans] ref|NP_495950.1| Y9C2UA.2 [Caenorhabditis elegans] 7.0E-40
blast CAA15518 Hypothetical protein Y9C2UA.2 [Caenorhabditis elegans] ref|NP_495950.1| Y9C2UA.2 [Caenorhabditis elegans] 8.0E-40
Sequence
Target Sequence 
>C. ELEGANS:182013_AT
gtcctcccgaccttgaagatgaaccattcatggaaaaccaagacgtagcaggtgaaaacg
acctttttgtgttggacgggcgccaagacccgccaaaccttccacaaaaccatctggaag
aagtcgtcggtgaaatagtggaaaatttggagagatggcattttgcagagatattggcag
atggtgccgagattcatgaagacattatagaagatgtgggtggagatgaagtggaagaag
aagaagtagacattgactgggtgtctccattatcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCCCGACCTTGAAGATGAACC 590 473 17 Antisense
GGAAAACCAAGACGTAGCAGGTGAA 83 527 48 Antisense
GCAGGTGAAAACGACCTTTTTGTGT 653 309 64 Antisense
TGTGTTGGACGGGCGCCAAGACCCG 373 501 84 Antisense
CCAAACCTTCCACAAAACCATCTGG 78 253 109 Antisense
AGAAGTCGTCGGTGAAATAGTGGAA 552 73 135 Antisense
GGAGAGATGGCATTTTGCAGAGATA 203 519 165 Antisense
GGCAGATGGTGCCGAGATTCATGAA 574 535 192 Antisense
TGTGGGTGGAGATGAAGTGGAAGAA 322 555 231 Antisense
GTAGACATTGACTGGGTGTCTCCAT 382 457 262 Antisense
TGACTGGGTGTCTCCATTATCGAAA 229 569 270 Antisense
Sequence Source Affymetrix Proprietary Database