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[182012_at]

Description Y65A5A.2 /REP_DB=WormBase Gene ID /WP=CE22719 /TR=Q9XTW3 /GB=CAB07435.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 58.5
(3)
A 		50.6
(2)
A 		11.9
(-3)
A 		13.8
(-2.8)
A 		47
B 9.6
(1.2)
A 		12.6
(3)
A 		10.4
(1.7)
A 		2.7
(-3)
A 		10
C 23.7
(3)
A 		10.4
(-1.7)
A 		6.8
(-3)
A 		10.5
(-1.7)
A 		17
avr 30.6
(3) 		24.5
(1.3) 		9.7
(-2.8) 		9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 12.7
(-1.6)
A 		33.6
(1.9)
A 		4.5
(-3)
A 		10.7
(-1.9)
A 		14.6
(-1.3)
A 		39.9
(3)
A 		35
B 40.8
(3)
A 		22.1
(-0.2)
A 		5.7
(-3)
A 		9.3
(-2.4)
A 		11.3
(-2)
A 		23
(-0)
A 		35
C 37.6
(1.6)
A 		47.1
(3)
A 		40.5
(2)
A 		31.8
(0.7)
A 		6.9
(-3)
A 		34.4
(1.1)
A 		40
avr 30.4
(2) 		34.3
(3) 		16.9
(-1.5) 		17.3
(-1.4) 		10.9
(-3) 		32.4
(2.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.3
(3)
A 		11
(-0.2)
A 		3.1
(-2.7)
A 		2
(-3)
A 		19
B 3.1
(3)
A 		3.1
(3)
A 		2.4
(1.3)
A 		0.6
(-3)
A 		3
C 7.8
(3)
A 		3
(-1.8)
A 		2.4
(-2.4)
A 		1.8
(-3)
A 		6
avr 10.7
(3) 		5.7
(-0.3) 		2.6
(-2.3) 		1.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		11.9
(3)
A 		1
(-3)
A 		2.7
(-2.1)
A 		4.4
(-1.1)
A 		9.7
(1.8)
A 		11
B 14.2
(3)
A 		7.3
(-0.2)
A 		1.4
(-3)
A 		2.5
(-2.5)
A 		4.6
(-1.5)
A 		8.6
(0.4)
A 		13
C 14
(2.8)
A 		14.4
(3)
A 		10.3
(1)
A 		6.4
(-0.9)
A 		2.2
(-3)
A 		11.5
(1.6)
A 		12
avr 10.2
(2.2) 		11.2
(3) 		4.2
(-2.6) 		3.9
(-2.8) 		3.7
(-3) 		9.9
(2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8790
Sequence Type Exemplar sequence
Representative Public ID Y65A5A.2 NCBI
Target Description Y65A5A.2 /REP_DB=WormBase Gene ID /WP=CE22719 /TR=Q9XTW3 /GB=CAB07435.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070552 NCBI Caenorhabditis elegans Y65A5A.2 (Y65A5A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022390 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16411981:16415043:1 11/11 None
Y65A5A.2 ENSEMBL cdna:known chromosome:CEL140:IV:16411981:16415043:1 gene:Y65A5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16411986-16415049(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65A5A.2
Entrez Gene 190478 Entrez gene
SwissProt Q9XTW3 EMBL-EBI
WormBase CE22719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07435 Hypothetical protein Y65A5A.2 [Caenorhabditis elegans] ref|NP_502953.1| Y65A5A.2 [Caenorhabditis elegans] 1.0E-107
blast CAB07435 Hypothetical protein Y65A5A.2 [Caenorhabditis elegans] ref|NP_502953.1| Y65A5A.2 [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:182012_AT
tcaactacaataactacaccgccatcatcatcatcatcgacaattcaaatgttcacagtt
ccgtcgagcatttcactgaattctagtcaactgacgaataatatcattgtggaagtgccg
gacgaagagctcgtgccacggagcagcagttcagaggagctcaataatggagaacgtttg
acaaatttcgagacgatcaatgactcggaaagtaatcccgacggcgagaacaaaatcgaa
acaaatgtgccagctggagatgctccaaagataattctggctccccacgagccaatcacc
gagccaactgagcttttgccagtgatcagtgtggattcagtgtccgaagattcgaattcc
ccaatgtttatggattatgacgatgatgaaatttctggaaattcgacgatttccgccgat
tttaggcccagagaagcttcaaaaagtggcgaaaaagctgaaaatccgtattttctcgcg
tcgacaacggttttgccggcggttaatcatgatggatatgtcctgccgactgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTACAATAACTACACCGCCAT 310 631 88 Antisense
TTCACAGTTCCGTCGAGCATTTCAC 623 685 139 Antisense
AAGTGCCGGACGAAGAGCTCGTGCC 94 159 200 Antisense
AATGTGCCAGCTGGAGATGCTCCAA 223 163 331 Antisense
ACCGAGCCAACTGAGCTTTTGCCAG 502 89 385 Antisense
GTGGATTCAGTGTCCGAAGATTCGA 550 489 418 Antisense
GAAGATTCGAATTCCCCAATGTTTA 470 337 433 Antisense
TTTCCGCCGATTTTAGGCCCAGAGA 362 667 497 Antisense
TCGCGTCGACAACGGTTTTGCCGGC 18 601 563 Antisense
TTTTGCCGGCGGTTAATCATGATGG 500 671 578 Antisense
GATGGATATGTCCTGCCGACTGATA 371 407 598 Antisense
Sequence Source Affymetrix Proprietary Database